GgaEX7010955 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr27:2524612-2552152:+
Coord C1 exon
chr27:2524612-2524768
Coord A exon
chr27:2526387-2526455
Coord C2 exon
chr27:2552004-2552152
Length
69 bp
Sequences
Splice sites
3' ss Seq
GTCTCTTTGTGTCCCTCCAGGCA
3' ss Score
11.82
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
ATGGGGCTCAAGGAGAAGCTGCGTCTGCCTGACCTGTCCGCTGCCATGTTCTACTTGTGCTGTTTTGGTTCTCATGCAGATGGAGGGAGCGAGGAGCCGCCAGACCGAAGACAGGCAAGTGTAGACGCCCGGCAGAGCCGATCTGGGCAAGGTAATG
Seq A exon
GCACCTCCACAGAGAACGACTGTGCTTTCGAAGCAGACTACGCCATCCCGCCGCTCCCCGTGACCGAAG
Seq C2 exon
GTGACGCTGAGCAGGAGCTGGGACCCCCTCCATCCGTAGATGAGGCAGCAAATACACTCATGACTCGCCTGGGCTTCCTCCTGGGGGAGAAAGTCACGGAGGTACAGCCAGGGCCCCAGTACAGCATGGAGGTGCAGGACGAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'3-2,'3-0,4-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTGCCATGTTCTACTTGT
R:
TGCCTCATCTACGGATGGAGG
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]