MmuEX0046260 @ mm9
Exon Skipping
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105534734-105638268:+
Coord C1 exon
chr11:105534734-105534805
Coord A exon
chr11:105574696-105574767
Coord C2 exon
chr11:105638120-105638268
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTTCCTGTTAACAGGTG
3' ss Score
11.08
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
ATGGAGGAAGCGAGGAACCACCGGATCGAAGACAGTCGAGTGTAGATTCTCGCCAAAGCCGCTCTGGGCAAG
Seq A exon
GTGGCATCTCCACAGAAAGCGATTGTGCTTTTGAGCCAGACTATGCTGTTCCACCACTTCCAGTGAGTGAAG
Seq C2 exon
GTGATGTTGAACAAGAACTTGGCCCACCTCCATCTGTAGATGAGGCAGCAAACACACTCATGACTCGTCTGGGTTTCCTCCTTGGAGAGAAAGTCACAGAAGTACAACCAAGTGACCAATATAGCATGGAGGTACAGGATGAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580-'3-8,'3-3,4-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.923
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGATTCTCGCCAAAGCCG
R:
TTCATCCTGTACCTCCATGCT
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: