RnoEX0088557 @ rn6
Exon Skipping
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:93878070-93962757:+
Coord C1 exon
chr10:93878070-93878141
Coord A exon
chr10:93901201-93901383
Coord C2 exon
chr10:93962609-93962757
Length
183 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCATCCGATTAACAGGTG
3' ss Score
8.51
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
ATGGAGGAAGCGAGGAACCACCGGATCGAAGACAGTCAAGTGTAGATTCTCGCCAAAGCCGCTCTGGGCCAG
Seq A exon
GTGGCATCTCCACAGAAAGTGATTGTGCTTTTGAGCCAGACTACGCCGTTCCAGCACTTCCAGTGAGTGAAGGTATGCAGCACATTCGGATTATGGAGGGCGTGTCTCGCTCTCTTCCATCCTCCCCCTTACTCACACATCAGTCTATCAGTGTTCGGCTCCAACCTGTGAAGAAGTTAACTG
Seq C2 exon
GTGATGTTGAACAGGAACTTGGCCCACCTCCATCTGTAGATGAGGCAGCAAACACACTCATGACTCGTCTGGGTTTCCTCCTTGGAGAGAAAGTCACAGAAGTACAACCAGGTGACCAATACAGCATGGAGGTACAGGATGAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840_MULTIEX2-2/3=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.750 C2=0.728
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000077280fB14755
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGGAAGCGAGGAACCA
R:
ATTTTCATCCTGTACCTCCATGCT
Band lengths:
218-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]