MmuEX0046260 @ mm10
Exon Skipping
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105673420-105776954:+
Coord C1 exon
chr11:105673420-105673491
Coord A exon
chr11:105713382-105713564
Coord C2 exon
chr11:105776806-105776954
Length
183 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTTCCTGTTAACAGGTG
3' ss Score
11.08
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
ATGGAGGAAGCGAGGAACCACCGGATCGAAGACAGTCGAGTGTAGATTCTCGCCAAAGCCGCTCTGGGCAAG
Seq A exon
GTGGCATCTCCACAGAAAGCGATTGTGCTTTTGAGCCAGACTATGCTGTTCCACCACTTCCAGTGAGTGAAGGTATGCAGCACATTCGGATTATGGAGGGCATGTCTCGCTCTCTTCCATCCTCCCCCTTACTCACACATCAGTCTATCAGTGTTCGGCTCCAACCTGTGAAGAAGTTAACTG
Seq C2 exon
GTGATGTTGAACAAGAACTTGGCCCACCTCCATCTGTAGATGAGGCAGCAAACACACTCATGACTCGTCTGGGTTTCCTCCTTGGAGAGAAAGTCACAGAAGTACAACCAAGTGACCAATATAGCATGGAGGTACAGGATGAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580_MULTIEX1-2/3=1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.917 C2=0.896
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGGAAGCGAGGAACCA
R:
ATTTTCATCCTGTACCTCCATGCT
Band lengths:
218-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types