DreEX0077236 @ danRer10
Exon Skipping
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22556191-22630368:+
Coord C1 exon
chr3:22556191-22556288
Coord A exon
chr3:22595281-22595463
Coord C2 exon
chr3:22630220-22630368
Length
183 bp
Sequences
Splice sites
3' ss Seq
ATCTGTGTGTTTCTCTGCAGGCA
3' ss Score
12.19
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTTCTCTTTAGCCCAGTCCAGAGCAGTGCAGTCATGTTCAGGAACAGTCTGAAGATGCTGCTTGGCGGCAAATCCAACCGCAAGAATCGAAACAGTG
Seq A exon
GCAGTGACTCCGTGGAGGGCGAGTGTGTGTTCGAGGGGGATTACGCTGTCCCTCCTCTCCCGGTGACCGAGGGCATGCAGCACATTCGGATCATGGAGGGCGTGACACGCTCTCTCCCCTCCTCTCCTCTGCTGTCCCATCAGGCCCTCAACATGCGTCTGCAACCCATCAAGAGACTGCCAG
Seq C2 exon
GGGATGAAGGGCAGAATTTGGGTCCTCCTCCTTCTGTAGACGAGGCTGCAAACACACTGATGACGCGACTGGGGTTCCTGCTGGGGGATAAAGTGAATGAAGGGCCTGCTGGAGCACAATACACCATGGAGGAGCAAGATGACCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097-'5-17,'5-14,10-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.591 A=0.758 C2=0.740
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTAGCCCAGTCCAGAGC
R:
TGAGGGTCATCTTGCTCCTCC
Band lengths:
242-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]