BtaEX6089501 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48151225-48269641:+
Coord C1 exon
chr19:48151225-48151296
Coord A exon
chr19:48183323-48183394
Coord C2 exon
chr19:48269493-48269641
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCTCCTGTTTCACAGGTG
3' ss Score
11.71
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
ATGGAGGAAGCGAGGAACCACCGGATCGAAGACAGTCAAGTGTAGACTCTCGCCAAAGCCGCTCTGGGCAAG
Seq A exon
GTGGCATCTCCACAGAAAGCGACTGTGCTTTTGAGCCAGACTACGCCGTCCCACCACTTCCCGTGAGTGAAG
Seq C2 exon
GTGATGCTGAACAGGAACTTGGTCCCCCTCCATCTGTAGATGAGGCAGCAAACACACTCATGACTCGTCTGGGTTTCCTCCTTGGGGAGAAAGTCACGGAAGTTCAGCCAGGTGACCAGTACAACATGGAAGTCCAGGATGAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249-'2-5,'2-2,3-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.913
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCACCGGATCGAAGACAG
R:
TGTACTGGTCACCTGGCTGAA
Band lengths:
181-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]