GgaEX7011916 @ galGal4
Exon Skipping
Gene
ENSGALG00000006348 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chrLGE22C19W28_E50C23:439561-440055:+
Coord C1 exon
chrLGE22C19W28_E50C23:439561-439625
Coord A exon
chrLGE22C19W28_E50C23:439846-439900
Coord C2 exon
chrLGE22C19W28_E50C23:439984-440055
Length
55 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTGCATTGCCCACAGCAC
3' ss Score
8.42
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
ACATGACCTTCATCCACGAAGGCAACCGCACGCTGGCTGAGAACCTCATCAACTTTGAGAAGATG
Seq A exon
CACATGATGGCGAAGACGGTGCGCATCCTGCAGCGCTGCCGGGGCCAGGCACACG
Seq C2 exon
CTCCGCTGTCCCCGCTGCGGAATCGCTCCCCACACCGACCAGAGGATGCCAGGGCCATCAGGATCAGCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006348-'37-44,'37-43,39-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.640
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(11.3=100)
A:
PF0061714=RasGEF=PD(0.5=5.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGACCTTCATCCACGAAG
R:
ATGTGCTGATCCTGATGGCCC
Band lengths:
137-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]