RnoEX0074027 @ rn6
Exon Skipping
Gene
ENSRNOG00000059961 | Rapgef3
Description
Rap guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:621869]
Coordinates
chr7:139234323-139235321:-
Coord C1 exon
chr7:139235257-139235321
Coord A exon
chr7:139234489-139234543
Coord C2 exon
chr7:139234323-139234394
Length
55 bp
Sequences
Splice sites
3' ss Seq
GACTCTTGTGTTGTCCTCAGCGA
3' ss Score
8.88
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACATGACCTTCATCCATGAAGGGAACCACACACTGGTAGAAAACCTCATCAACTTTGAGAAGATG
Seq A exon
CGAATGATGGCCAGAGCCGTGCGGATGCTCCACCACTGCCGAAGCCACAGCACCG
Seq C2 exon
CGCCTCTATCACCACTCAGAAGCCGGGTTTCCCACATCCACGAGGACAGCCAGGCATCAAGAATCTCCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059961-'42-51,'42-50,43-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(11.3=100)
A:
PF0061714=RasGEF=PD(0.5=5.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATCCATGAAGGGAACCACAC
R:
TGGAGATTCTTGATGCCTGGC
Band lengths:
126-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]