DreEX0007295 @ danRer10
Exon Skipping
Gene
ENSDARG00000075924 | RAPGEF4 (1 of 2)
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:HGNC Symbol;Acc:HGNC:16626]
Coordinates
chr6:6759431-6765121:+
Coord C1 exon
chr6:6759431-6759495
Coord A exon
chr6:6760090-6760144
Coord C2 exon
chr6:6762442-6765121
Length
55 bp
Sequences
Splice sites
3' ss Seq
ATATATTTTTCTATTTTCAGCGG
3' ss Score
8.56
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
ACATGACGTTTACCCATGAGGGGAATAAGACTTTTATTGACGGACTGGTGAACTTTGAGAAGATG
Seq A exon
CGGCTGATTGCTAACACAGTGAGAGCGGTCAGGCATTGCAGGAGCCAGCCTTTCA
Seq C2 exon
ATGCTGAAGCGTCTCCAGCCAGTAAGAATCCACAGGAAGTGAGGAATTATGTGCGCCAGCTGACTGTGATTGACAACCAGAGAACCCTATCACAGCTGTCCTTCAGACTGGAGCCAAGACGGGGCTAAGGACCAATGCTGAGTCTCTCTCTCTCTCTTTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTAAAATACACCTACTGTATATCCAGTTTACAGCAGTACAACTCAATTTTACGTCTATTGGCTGCCAGAGCTGTTGCCGACTGTATGTGCTATCACTGCCAACTCGACTTTGTGTACAAGATGCATTCTCATACACGAACGGTCAAATTAGATATCAGTAAGGTTTTTAAAAGAAGATTTACCTCACCAACACTGCATTTATTTGATCCAAAATAAAGTAAAACATGTGAAATAAGATCACTGTTTCAAACAGATTAAAATGTAGATTAAAATGTAATTTATTCCTGTGATTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075924-'31-32,'31-31,32-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.308
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(11.4=100)
A:
PF0061714=RasGEF=PD(0.5=5.3)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGGACTGGTGAACTTTGA
R:
TTGGCTCCAGTCTGAAGGACA
Band lengths:
145-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]