RnoEX0074051 @ rn6
Exon Skipping
Gene
ENSRNOG00000001516 | Rapgef4
Description
Rap guanine nucleotide exchange factor 4 [Source:RGD Symbol;Acc:621886]
Coordinates
chr3:58909285-58924038:+
Coord C1 exon
chr3:58909285-58909349
Coord A exon
chr3:58920485-58920539
Coord C2 exon
chr3:58923914-58924038
Length
55 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGTGATTCCTTACAGCGC
3' ss Score
10.66
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATATGACATTTACTCATGAGGGGAACAAGACATTCATTGACAATCTAGTAAACTTTGAAAAAATG
Seq A exon
CGCATGATTGCAAATACTGCCAGAACGGTGCGCTACTACAGGAGCCAGCCATTCA
Seq C2 exon
ATCCGGATGCTGCTCAAGCTAATAAGAACCATCAGGATGTCCGGAGTTATGTACGGCAATTAAATGTGATTGACAACCAGAGAACTTTATCACAGATGTCACACAGATTAGAGCCTCGCAGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001516-'62-51,'62-50,64-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.690
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(11.4=100)
A:
PF0061714=RasGEF=PD(0.5=5.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCATGAGGGGAACAAGACA
R:
AGTTCTCTGGTTGTCAATCACA
Band lengths:
140-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]