BtaEX0029695 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020984 | RAPGEF4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:HGNC Symbol;Acc:HGNC:16626]
Coordinates
chr2:23644876-23661536:-
Coord C1 exon
chr2:23661472-23661536
Coord A exon
chr2:23649119-23649173
Coord C2 exon
chr2:23644876-23646256
Length
55 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTTTTTTTTAGCGA
3' ss Score
10.97
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATATGACATTTACTCATGAGGGGAACAAGACGTTCATTGACAATCTCGTAAACTTTGAAAAAATG
Seq A exon
CGAATGATTGCAAATACTGCCAGAACAGTGAGATACTGCAGGAGCCAACCCTTCA
Seq C2 exon
ATCCTGATGCAGCTCAAGCTAATAAGAACCACCAGGATGTCCGGAGTTACGTTCGGCAATTAAATGTGATCGACAACCAGAGAACTTTATCACAGATGTCACACAGACTAGAGCCTCGTCGACCATAGACATTTCAAGTGCCCAGAACAACGTTTGCCTCCATTCACAATCTTTAAAAAATGCCATTTATGCTACTACTGACCATACTGTCACTAGAGAATTCTATAAAACAAGCAAAAACCCATCCTGAGACATCTCAGGGCTGCATTCAGCTTACCAGCATCATGACAAGAGAAGAAATTCTTTGACTTGCATACAGCTTGCACACTCTAACTTAGAAATCCCCTGTTCATAGTCACCTTATTTTATTTCCAGTCGTGCCATCTTCTTTGCTGAAACATAAAATAAGAGCAACATGAAGAGTATGGTAGAAATATCATTGTCAAGAGAAGTATCAAGCTCCTGATATTTTTTCTAGGAGTATTTACAGGATGAGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020984-'47-44,'47-43,48-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.667
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(11.4=100)
A:
PF0061714=RasGEF=PD(0.5=5.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGAGGGGAACAAGACGT
R:
AGTTCTCTGGTTGTCGATCACA
Band lengths:
139-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development