GgaEX6042297 @ galGal3
Exon Skipping
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18753689-18763224:-
Coord C1 exon
chr7:18763160-18763224
Coord A exon
chr7:18755317-18755371
Coord C2 exon
chr7:18753689-18753816
Length
55 bp
Sequences
Splice sites
3' ss Seq
ATCCCATCTTTTCTTTCCAGCGC
3' ss Score
9.86
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ACATGACGTTTACTCATGAGGGAAATAAGACACTCACTGACAATCTAGTAAACTTCGAAAAGATG
Seq A exon
CGCATGATTGCCAACACTGTCAGGACGGTGAAGTTCTGCCGAAGTCAATCCTTCA
Seq C2 exon
ATCCTGACGCAGCCCTAGCTAATAAGAACCATCAGGATGTTCGGAGCTATGTGAGGCAATTAAATGTGATTGACAACCAGAGAACTTTATCACAGATGTCTCACCGACTAGAGCCGCGTCGGGCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357-'41-45,'41-44,45-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.381
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(11.4=100)
A:
PF0061714=RasGEF=PD(0.5=5.3)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGACGTTTACTCATGAGGGA
R:
CACATTTAATTGCCTCACATAGCTCC
Band lengths:
133-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]