DreEX0060853 @ danRer10
Exon Skipping
Gene
ENSDARG00000079872 | rapgef4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-385]
Coordinates
chr9:2943252-2947636:-
Coord C1 exon
chr9:2947572-2947636
Coord A exon
chr9:2947435-2947489
Coord C2 exon
chr9:2943252-2943711
Length
55 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTTTCCAGAGA
3' ss Score
9.26
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
ACATGACTTTCACACACGAGGGAAACAAGACCTTCACTGACCGACTGGTCAACTTTGAGAAGATG
Seq A exon
AGAATGATTGCAAACACAGTCAGAATCATAAGATACTGCAGAAGTCAACCATTTG
Seq C2 exon
ATCAGGAAGCTCCGCAGGCGACGGGTAAAAGCCATCAGGACGTGCGCACTTACGTCCGCCACATCAGCGTGATCGATAACCAGCGCAGTCTATCACAGCTGTCCCACCGTCTAGAGCCCCGGCGGACATGAAAACCCCACAGCTTCACCTCCACCTCAGCCAGAAGATAAGCTAGAGCAACACAGCAGCCAAACACAAGGGCTTTTCCCCCCCGCGCCGGCTTGTCTCAAAGTGTGGCTTCGTCTCGGTGTGCGGATCTGCAGGCTTTCTCATATTCTGCCACGAAAGACGAAGAAGACGATGCTGATTCGAGATGCTGCTTCTCTTTATTTACAGGTTTCTGAACAGTTTGACACCATACACTAATATTGGCATCCTTGGTAAATAAGAGGAAAGAATGATTTGGAAAATGTTGTTTTATGTTTAATGATCTTTTCAACGCAGGCTCATTCTGAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079872-'39-40,'39-39,40-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.535
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(11.4=100)
A:
PF0061714=RasGEF=PD(0.5=5.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACACGAGGGAAACAAGACC
R:
ACTGCGCTGGTTATCGATCAC
Band lengths:
143-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]