GgaINT0000632 @ galGal3
Intron Retention
Description
NA
Coordinates
chrE64_random:56622-58370:+
Coord C1 exon
chrE64_random:56622-56939
Coord A exon
chrE64_random:56940-58056
Coord C2 exon
chrE64_random:58057-58370
Length
1117 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
AGAATACTCCAACACCACAGAAG
3' ss Score
0.37
Exon sequences
Seq C1 exon
TGGAGGCAGCAGAGATCCGTCTAGTGAATGGCCCCAGCCGCTGTGCTGGCAGAGTGGAGGTGCTGCATAATGGACAATGGGGCACGGTGTGTGATGATGGCTGGAACCTCCAGGCTGCCACTGTGGTGTGTCGACAGCTGAACTGTGGCAGGGCTGAGTCAGCCCCCAGCCGTGCTCGCTTTGGGCAAGGCACCGGGCGTATCTGGCTGGATGACGTGTACTGTGCTGGGACTGAGGATGCCCTTCACCAGTGCCGAGCCCATCCATGGGGACTGCATAACTGCAACCACAGAGAAGATGCTGGTGTGGTTTGCTCAG
Seq A exon
GTTAGTTGAGTTCTGCAAAACAGAGCAATCTCTTTTTGGCTGGATTAATCTCCAGTCTAGCCCAGGCCACCATACAAAGCAGGCACTGAGCCCTATGCCAGGCTGAGGAAGCCAAGATGCTCACTCATAACCAGCAAATAGAAATTGCACATGGCACCAAGTGAATCTAGCATGGGTCTGGCCATTCATCTCAACTTGGCTCCCTGGAGGGTCTGACTCCCCTTCCTAACCGGCCAGGTCCCCACTGGCACTTTTGTCTGCTTCACATAATTTCATGGAGATGACACCAATACTGTAGGGTCTGAAGCTGGAACTGAACCCTACCTCCATAGCCAGGTGAGATGAATTCCTCAGAAAGGGTTGAGGGCTTGAACCTTGTCTTACTTTGAGCCGTTGGTTTTCTTCATAGTATCTGATATGGTGCTATGTTTTTTAGGGGAGAAAAACTGATAACACACAGACATTTCTAGTTGTTGCTGAGTAGTTCTGTACAGAGTCAAGGATGTTAGTTTTCTCAGCTTCTTGTACTCTCCTGCCAATGAAGAGCTGGAGGGGCACAAGTATCTGGGAGGGGGTAGAGCCAGGACAGCTGACCTAAACTGGCCGAAGGGATATTCCATACTATATGGAATCATGCAGAAGGAAAGTCTGAAAAAGGTGGGAGTTCACCAGGCTTCCTTCCACTGCTCCGGGACTGGCTGGGCATCAGTTAGTGGGTGGTGGGCAATTGCTTGTGCATCACCTTGACAAATATATTTGTCAAGGCCAATATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCATCTTCGTAAATAGTTCTTATCTCAACCCACAAGTTCTACATTGTTTTTTCCCCAGTTTTCTCCCCCATCCCACTGAGAAGGAGTGAGAAGGGGCGGGGAGTGAGCGTGTGTGGTGCTTGGCTAAACCACAACACACCTCCATCCAGGGGGGAACCTGAGCAACTCTTAGCACTTTCTTCTTCTTCTTCTTTTTTTTTTTTTAAATTTTAATTTTTATTTTCAGTGATGCAAAGTGACAGATGACAGATGCCTTATTTTCTCTTCAACAGAAAACCACACATTTCCCGCTGCAGAATACTCCAACACCACAG
Seq C2 exon
AAGAAATGCAGATCCGGTTGGTGAATGGCCCGAATCACTGTGCTGGCAGAATTGAGGTGTTTCACAACGGGCAGTGGGGAACAGTGTGTGATGACAGCTGGAATTTAAGGAGTGCTAAGGTGGTGTGCCGGCAGCTGGGCTGCGGCACAGCGGTATCAGCTCCGGGCAAGGCTCACTTCGGACGAGGGTCTGATCCCATCTGGTTGGATGATGTGGAGTGCAGTGGCACTGAAGCCAGCCTCTCCCAGTGCAGACTGAATAACTGGGGAAACCATAACTGCAACCACGAGGAAGATGCGGCAGTGGTGTGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103:ENSGALT00000014816:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=91.6)
A:
NA
C2:
PF0053013=SRCR=WD(100=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCTGGATGACGTGTACT
R:
CCACTGCACTCCACATCATCC
Band lengths:
343-1460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]