Special

MmuINT0006614 @ mm10

Intron Retention

Gene
Description
scavenger receptor cysteine rich family, 5 domains [Source:MGI Symbol;Acc:MGI:3606211]
Coordinates
chr7:4927896-4928693:+
Coord C1 exon
chr7:4927896-4928009
Coord A exon
chr7:4928010-4928384
Coord C2 exon
chr7:4928385-4928693
Length
375 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTCCCCCCACCCCTCCCCAGAGC
3' ss Score
9.12
Exon sequences
Seq C1 exon
CTCCCCAACCAGCAGCAAGCTCCCAGAATGGCCCCCGGAAGAAGAACCCCCGGCCACCCAAGCAGACCAAGTCCACCCGAGCCCCTGTACTGACAAATGGAGCTCCCCACCAAG
Seq A exon
GTAAGGCTCTACATTTCCCTGTCTTCCTGATCTGTGTGCTACGAGACCCTAGACCCTGCCAAACTGAGGACCCTAGACCTCCATTCAGCCTGTGACTCTCTAAGGAGACCGGCGTTCACAGTGCCCCTTCAGATCCAGTCAGGGCTGGCCACCTCCTCTTCTTTATCCTCCCTCTATGAGACCCAGGGGGGTGGCCGGTCTCTTTTCTGAATTAGGTACTTGGCAGACAAATCTCAGTCTTCTGCTCTTCCTGGGCCTCAGTTTCCCCAGTTGTAAACAAACAGGAAGCTGCCCCCTCCAAGCTGACATTAGACTAAGCCTTTTACAGTCTCTCATCTTCCCTGGTTGTATTCCTCTCCCCCCACCCCTCCCCAG
Seq C2 exon
AGCGGCTGCGACTGGTCTCAGGTCCCCACGGATGTGCCGGCCGCCTGGAAGTCTGGCACGGTGGACGTTGGGGCACTGTCTGTGATGATGGATGGGACCTCCGAGATGCAGCGGTGGCCTGCAGGGAGCTGGGATGTGGGGGAGCGCTGGCCGCCCCTGGGGGTGCCAGATTTGGACCTGGTGAGGGACCTGTGTGGATGGATGACGTGGGGTGTGGAGGAGGAGAGGAGGCCCTCCGAGACTGTCCCCGAAGCCCCTGGGGCCGGAGCAACTGTGACCACACCGAGGATGCAGGGCTGGTCTGCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035279:ENSMUST00000057612:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=NA C2=0.192
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
PF0053013=SRCR=WD(100=94.2)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCAGACCAAGTCCACCC
R:
ATCCTCGGTGTGGTCACAGTT
Band lengths:
346-721
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types