GgaINT0000838 @ galGal3
Intron Retention
Description
NA
Coordinates
chrE22C19W28_E50C23:840096-840439:-
Coord C1 exon
chrE22C19W28_E50C23:840335-840439
Coord A exon
chrE22C19W28_E50C23:840152-840334
Coord C2 exon
chrE22C19W28_E50C23:840096-840151
Length
183 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTTCTTTTTTTCCCCCTCAGTTG
3' ss Score
10.76
Exon sequences
Seq C1 exon
AACTGACCCTTCTGAGATCAACATCTCAGATGAAATGTCAAAGACAACTGTGTGGAAGGCTCTCACCATGAATGCAGAAAAACTCTGAATCCGAGGAGGAAAAAG
Seq A exon
GTAAAAGGTAATGGTAATGGTGAATGTGACCGTGCTGCTCTGCAAGCCACAGTGCCAAAGAGCTCATCCCCAGCAGCAGGCAGCAAGCACCGGGGGATGTTTAGATTGAAGGATGGATGATTTTAGAGGTTTTTTCCAACCTTAATGATTCTCTTTCCCTCTTTTTCTTTTTTTCCCCCTCAG
Seq C2 exon
TTGTCCTCTTTAGGGATCTTGGCTTTGAAGGAGAGGAGCAAGAACGTGACTCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423:ENSGALT00000013720:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.345 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGACCCTTCTGAGATCAACA
R:
CCTGAGTCACGTTCTTGCTCC
Band lengths:
159-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]