MmuINT0147268 @ mm9
Intron Retention
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100644881-100654402:+
Coord C1 exon
chr15:100644881-100644976
Coord A exon
chr15:100644977-100646049
Coord C2 exon
chr15:100646050-100654402
Length
1073 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ACTGTGACGTTGTTTCTCAGCCC
3' ss Score
6.18
Exon sequences
Seq C1 exon
ATGTGACCCTTCTGAGATTAATATATCAGATGAAATGCCTAAAACCACGGTCTGGAAGGCTCTCAGCATAAATTCCGGAAATACAAAAGAAAAAAG
Seq A exon
GTAAGGAGAGCTCTTGTTTGTCTTTCATTTTCTTCTGTTTTTTGGAAATTGGCGATACTGTTGAAGGTAAAATGTATGTTGCTTGTAGAACTGAATTTGTCTAGTAAGTAACAGAACTGTTGCTAACCTTACAGTAAGGCAAATAAAAATAAAAAGTTTCCAGATATTTGGAGACAGGCTGTTCTGAGCCGTCCCTCACTCCGGTCCCAAGGGCAGGCTGTAATTATTTTGGGATATGAATTTGCTTTACCGTTTGACTCCTTTAATCCACTGGGAGGATCTTTCTCAATTCAGAATTTTTGTCTCTTGTTACTGCAACAACAAAAACTGGAAAGCTGCTAAAAACCTGGATCAATACTGTTAACACTAATAAACAATATGATAGTATTGGCCCAGACTTTAACCTACTTAGCTTAGATTCTGAAAAGAGAGTTTTGTTAAACATGACAGTTTTCTTATTCTGCAAAGAAATTTCTCTGTATAATAACAGCATAGATCAGTTATAATCAGATTATTAAAGAAAATTGGAGGTGGCTTTGCCTACATTAAAGGAATGCAGTGCATAAGTTACTGATTTTGGCCCAAACACTACTTACATTTAAATCATCAGAGAAATGAAGGCAAAACTCCAATGTCTTGATACTGATAACAGTTTTTGTTAAAAAACAAGCAAGTCAGGAACCAGGAAAGCTGGCCCGCCCTGCTTTTATCTCCGCACATAACCGGGCAGGCTGCTGCTCCTGGTGTTCAGCTCAGCTGCAGGATGGGGGTACTATCAAGGTTGTTCCAGGAGCAGAGAGCTCCTCGGAGTCGTGCCCACCAGCACATGGTGTGGCAGCTTCTTCACTGAATGGGTTAAAATAGATCTGAGCTGAACATGAGTGAACACAGAATCTTGCTTCCCTCAGAGGAAAATCCAGGCAGCTGTGGGGATGTATAACACATGTGGTTATTTTTAGTTGAGAATTAGTCTACTTGTAAATGAACTTAAAATACAGCCAGATCCAAGTAGCATCTTCGGAGTGCTGAGAGAAAGAGCGCGCACTTTGTCTCACTGTGACGTTGTTTCTCAG
Seq C2 exon
CCCCTTCAACTGAGAGTCTCTGCTGAGTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTGGTCATCTCAAAGCCATGCCACATGGAAGCATTCAGTCACTCCCGGTGTGCGTTTGGAGGACATCCAGCTACCCACATACCAGCAGCCAGGCGCCAGTCGGGTCATGGTGGGGCCGCCTCCCGCTGCCTCCTTTCCTCTTCCTTCTCTCTCTTCAGAGCTGCCATCATTAAAGAGCCAGCTTCCATTTTCAGACATTTTCTCTGATACTCTGCTGGCCTGGTAAGCCACACGAGTCCATTCTGTCACAGAGGATTCCCTCTTCCGAACGATAGCCTGGGGTAGTGGCAGAGGCAGGACAAGGGCAGGCTCTCCAGCAGCCTGTGCCTTGGTTTCCTTTCTGCCTGGGAAGGGGATGTTGGACAGGCAGACACAGTAGCAGGTCTGCTGCCTGAGCTCCACCATCCAGGCATCAACAGCAACCACCACAGTGAGCTGCCTCTGGCCTGGGGTCATCTGCATCACCTCCAGAAGCAGTGGGCATAACGTTGTGAGTCCTTGGAAGATGCGGGGACAGCATGAGAGCAGGAGTTTAGCTGATGTCAGGAAAGGCCTAGGGGAAGCCAGCAGCGCTCGGAGTGTGAGCATCTTTCCCTGGAACGAGAGAAAGAGGAGCCTAACTTGCTATGGAAGCACTTAGGTTTCCAGGCCTGGAGATCTGTTCCAGGTCTGTTTTTTTAAGTCTAGGAAAGTCTTGCTGACAGCTGTTTGTAGGAAGGAAGGTGGATCGGGGCTGCTGCGGCTGCTCTGTGTGAACTGTTTGACTTGATGCTGCTACCTCTCGTGGTGACATTGTTATAACACCCTGGAGAGACCCGAGTGCTCATGGATGTCCCTTAGCTGCCTTAGTCGGGAGAACCATCATCATCCACTCGGTGGACCCAAACCGCCATCAGCCATGTGACTTCCTAATCATGGGTTTCTTTTGGTTGACAAGTTCTGGCTCAGGTGTAAAAGCCACACGAAGAAATGAGCTGTAAGCGGTGGCATCACTTTGGATACTTAGTTTAAAAGTATATGTGTGATTTTCTATGTTCCAAAACTATCATGAGTTTTTTGGCCCGAGCAAGTGTAGACCTCCCCTTCCTTTGTGCCCAGACTGTGACTAGTGAGCTGGGACAGTCTCTGTCCAGAGACCACACACACACAGTGAGCTCTCTTCCTCTCCTGGCTGAAGAGGCTCTACATCATTCGATCACAGTTTGCTCCCCCTCAGACTCGCTGAAACATCTAGTCCTTCTCTGAAGGTCTTAGGTGTCGGGGGCCACCCCGTGTTGCCCGTTCCTCCCTACCTGTCAGGACCACTGCCATATTGATGCAAGATATTTGACAATTGATACAGGACAGACACGAGCCACACAGAGCCGGTGTCTTCTGTAGAATAGTGGTGGGCACTGCTGTTCAGGGCCTGTGGGATGAACGTGACCCTGCTTCCGATCCCAGAATGGCCTCTGGAATGTGGGTTTGTCTGGTCTTTACTCATGGGAGATGTGCGTTCCATCTGAGCAGCCACCCTGGCTTGCTCTCAGGTAGCACATACTGCAACAGGTGGGTTTCCTAGAAATCAGTGGACATTCAAGTCTCTGTTAGCCAAACAGCCCAAGCATGTCACTTGAGGACAGATTTAATAAGCATAGCCTTGCCCACCTTGGATTAGGAGCCGGCCTGTCAGTGGGAAAGGTTTTTGATGCCTTCCTGGCCCTCCTCACACTTCTGGAACTCGAGTCTTTTCTCACTGCTTGCATTCTCTGGGAACACCCCTCTCTTCCCGGACTGGTTTCTCCTCTGTTTTTCCTGCCACCTTCTGTGTAGGGAAACTGATGACTGCTTCACCCTGCCCTGGCCTCAGTGCACTTGAGAGACATAATGGTGAGGACCCTGACGTATGAGGGAGCCAGTGACTTGTCACTGAAACTTACTCTTCCCACACGATGACGCTTGTGCAGCCTCCTGTGAGCTATGCCCTGGGCTGGAGGGTGGAGGCTGCTCTCGCCCGCCCTGAGCAATGCACTTGTGGAGCCTCATGCCCATGTTTGCACTGGTCATCTCTTCTATGACAAGGGTCGCTCTCAGACACGTCTTGAATGTGGCCAGCTAATGTCATGACTTGCTGGTAATGTCAGCTGGTGGTGTGAGTGGAGTTGGGGGGCTGGGACTCAAGAACACGTTAATTGAAGCCTTGGCTCTGAGGGAAAAGATGGAGGGTTCCTAAGTGGCCAGTTGCTTCCCGATGACCATCAGGGAAGGGTTGCTGTAGAGAAAGGTGAAGAGCTGGAGAGACGGAATGTGCAAGTGCCAAGTGTGTTTGGTTGCATAACACATGCAACTTGGGAAGCTTTGTCAGGAGGCTCCGGACTTTCCCACTCCCAGCCCCATGTTGGGTCTCCTTAACCATGAAAACCTGTCTTCCCGATAGAGGGAAAGTGAACCATCTCTCTCCAAAAGACAGTTGCGGTTTCTCATTGTCGGTGATGGAGCAGACTTTTAAATTACTCACTAATGTTGGATGAAAATGTGGTATTCACTAAGTTCCCAGCCTGCCCAGACTCTGCAGAGTCTGTGGTTTATGATCGTCCAGAAAAGGACAGTTCCTAACTCCACTTTTCCTTGACCTGCTCAGCTCAGCAGACCTGCTCCTTAGTGGGGAGGCAGGGGTTCTCCTTGTATCCTGTGTAGTAGGTGCAGTGTCTGTCCTGCCTCTCCACTTGTCCTGGGTTGTAGTGAGTAGCAGACACACTGTCTCCTGTGTGTCTCCCACCACTGGGCCGCTCGATGTCCCTGAAGATCTTTTGATGTAATTTAATCGTATGGGTGTTTTACCTTCACACAGGCCTTTGCACCACATGTCCCCCATGCTTCAGGAGATCAGAAGGAATCCGATCCTCCTGGAGCTGGAGTTACAAATAGCTGTGTGCTTCCATGTGGATGCTGGGGATTTAATTGAACCTGGGTGTAGCTGGTCTTTGCTACTTTGTGGGTTATTTTCTCACCCTTTGCTCCCTCTCCCAGTTTCACTCCTTGACACTAGATAGGACAAAAACGGGGGGCGAGAGGGAGAGGGAGAGAGAGAGAGAGATCGAGATCAAGAGAGACACCCCTGTATCTAAATTCCTTTCTTCTTTGAACACTACGAAGAAACCACAACCAACCACACACAACTCCCAAACAACCAACAACCACCCATCCTGCTTTTTGGGAGCCTAGCATTTATAGACTTTCTGAAAAGTTCCTAGAATTCCAAAACTTGACACAATGCCAGAGACTGTCTGCAGCTGGCAAAACCACACTTCTGCTAGAGCACTAGGCAAATCATGTCAGCTGCTGCCGACACTCCAAAGCAGCCCCACATCCCCACACCTGGGGACTAAAATGATAACATATTCTTATATTTGTTTTTTAAAGAAACCAGAATTCCAGAGTTCTCACCACGATTCCCCACTTCTGTTTTAAGTCATTAATTGTGCTGTGTATATCAGGAAATTATAAACAGACATTTTCAAGGAACTGAGTGTTCAGGTTAGTGCCAAGGTGTTGAGGAGACCTCTCCTGCTCGGTCCTAATCTTTATCAGTTTTGATGGTATCCACAGCTTTTCGTTTCCTGTGGAAGTATAAACAATTCCCCATCCCCAATGCAAAACTTTTCTGTTCTAATATTAACACATCTTTATTCTATATTGTAAAAAATTCAGTTTTTCCTCTCGGCCCCTGCTCCAGGAATGACCACTCCAAGACTCCTTATTATTAAATGCCTTGGCCAGAAGCCTTGCCTCATCCATGACTGGCTCGTAACCTATTCAACCCATTCAAACTCTTCTATGTCATCCTCATGGTTACTTCTCCTCAGTCCCGGCTTGCTTCATCCTTCTCACTACCTCCTCCTTGTCTCACTATCTCCCAGAATCCTCTCTTCCTGCCATTGTCCCACCTCCTATTTCTTGCTTCAGCTCATTGGCCATTGGTGGTTTTTATTGACAAGAGATGCTAATAAGAGATTCTACAGTACATAGGCTGATGTAATTCCACAGTTTTTTTTCTAAAACCCAGAGTATCTCAACTGCTGCTGTTCCTTTCTCATTAATATTCAGAAAATTTAAAGTTAGCAGAGAGTAATTGTCTCTTTTTTTCTCTTTGCTTTATAAGCATTTCCTTTAGGTAAAATGAGATCTTTCTACAACTGCCTGTCCTGTAGGATTGCATGAATATTAATCTGAGCACTGCACAGTTGTAGAAGAGCCCTTCCCCATAGACTGATGGGTCGGTCAGAGTCCTTCCCCATAGACTGATGGGTCGGTCAGAGCCCTTCCCCATAGACTGATGGGTAGATCAGCCACATCAGGTCTTAGCTTTCCTGTTAGACCTTCTGGTCCCACACATTTCACCCATTGCACACTTTGTTTTATCTGAGATAAATTTCCGATTCCTAGAAACTGTATAAACCTTCCAAAGTGGCCATTCTGAATTCCAAGATTTTTTTGTGAACTGATAGTTACATCAGCGCCTGTATCCACAAATTTGTCTACTTCAGTACCTTTTATGTGAAATTTTAATATTTGCCTCTGATCATTAACAACTGTTTGCCGGAACACATGCTTTTCAGTCCTTTCAGACCCTCCTGTTCTCTCTACTGGAGCAGCTTTGTCTCTGGGACAGGGAAACAGTAGCAGCCGAACAAGCCTCTATCACCTGCATTAATTTGCATCTCTCTCCCTCTCCCTCACACACACACATGCCATAACTTTAATTTCTCCTTTGAAATCTTCATGTATGATTCCTGGGTGCACAGTGAATCCTTGGGGAATCAATCCATCTATTCTCAAGATCATCCCACTGTCTCTGCAGGCAAAGGAGCACGAACTCTCTCGAAGTTTTGGATATAGAGTAATGCTTTTCTGTGGCCGAGTCTAGAGCAGCACTGCCTGCAGAGGTGTTAGATCTCCAGTGCTGAGTGCAGGTTTTAGTCTGCGTGTTATGGCTTGACTGGAACAGCTCACAGTCTTTGCTTGGTGGGGAGCTAAGCTAGGCCCCCAAGGCTGTTTCCTTGAATATCTCTTTTGGATCTGCATTCCGGAATCCAGTGGCTGCCTTTGCCAAAGTGCATACACATTGCAGGAAGCCTACGAGTCCTGTTTCAGATTCAGGAAAACCATTGCCTCTAGAAATGACTGATTCACTCTTCTGCTGCAAAGTACTGTCTTTCTCCCAGTTAACGCACTGGGTGGGTATTTTGAGGTCAGAGATTTTTAGCTCTAGCTTGGCCTGTTCTATTAGCGTGGTACACATTAGAACCAATATCGATCACATCCCTTATCCATTCTGCCATAGACGCTTGCTCGAGCCTTTAACGTTTCGATAACTTTTTTGCATTTGGTTATTCGCCTTTTCAACAACTAAGGCCTCTATCAACACCTGCCTTCATCTTGATCTGGTACGGCTTCCTTCACAGCTGAGACTAATCTTTGTAATCAGTGAAGGCTTCTCAGAAGCCCTGTATAATCTTTATAAATGAGGTGGTCTTTTTCCTGGGCCCCTCAAATTTGTCCCAAGTTTTAAAGCCACCAAGCAACATTGTTCAGTAGTAATATTATGTGATTGAACCTGTTCTTGTATATCAGAGCCCTGCCCTTCACCCAGCAATGGTGGAGCTGATGGGATTCGGCTCAGAGAGCTGCCGCTGGAGCTGCTGCTTGTGGTGCTAAGGACTAGAGAATGATGGGAAAATCCTACACTGAGTGGCTGAAGCAAGGCAAGCTCCAACAACTTTGTTTTCTCCTTCAGCTCGTTTGTACCCAAAAGTGGTCACCACAAAACACTTTTGAAAAACATGTTAAAATCACTACACAAACTGAAATTACAACAGGATTACTGCTTGCATATCCTTCTTTTGGAACTTTGACCTAACTCTACATTCCTCATCTGTCTTTCTCTCCACAAGTTCACTGCCACCCCAAAGCAATAATTCTCTTGTCATAGACTAACAAAGCTTAAGCAGACCAAGTAGAGAGTAGTATGTTTCTCCCAGTGCTTAGATGGTGACAATCTTGTTTGCTAAGGAACAGGTCATCTGTCTTGCATCTTGTTTTTGAAGTCTTGGTCAGCTAGACTGGCTAGTCCTCTCTCTCTGTTCTTACATACACAGTGAAGTCCCCTGCTCTTCGTTCATGACCTTCCTTCTCATGGTGCACACAGAAACCAGTGCCACACCTCTGGATCACAAGATCAAGGAACTTAGACCCAACCTGGAATGAATGTCTTGTTTGATAATTAACTTGTCCCCAGCCTGTTTTTCTTGCTCCTACAATCGCGCGCTTGCAACGCTGAGGGCTCACTGGCGCCCTCACCTGTGCCAGTCTATGAGAAAGGGCCACACTCTGTTCTCGATTCGAACTTTGAACTTTCTATCAAATACTCTTAACTTCCCCAAAATTTTAAATTAAACTAACTTCCCCAAACTACTTTAAATTGGGAATTCCATAAAATCATTAATTCATGTAAGCAGCATTATCTCAGGAATGTTCATCTTCAGGTTGATCTTCAGGAAACTTGCCCCACAGAGTGGGCTACCACCCAGAAGTGGTCACTCCAGGCTACGGAGGCAGTGAGTGTCTCACTATGTCAAGTACATGAGGGATATAGCAGTGACAAACATGAGAAGGCACAGCAGTAGCAAGAAGCATCCCTGGGACGAAGCCCCTAGGGCTGGACATCTCCAGGGCACACCCACCCATCACAGCCAAGCAGAGCTGCAGGCTCCAGGGCACACCCACCCATCACAGCCAAGCAGAGCTGCAGGCTCCAGGGCACACCCACCCATCACTGCCAAGCAGAGCTGCAGGCTCCAGGGCACACCCACCCATCACTGCCAAGCAGAGCTGCAGGCTCCAGGGCACACCCACCCATCACAGCCAAGCAGAGCTGCAGGCTGGCTCCAGGAAGCTCACTTGCCCACTGCAGCTCCCCCTGCATGGCGTTCACCGTCCCTTGGAGGAAAGAATCCCACTCGGAGCTCCTCACTGTGCCACAGCTAAGGCGGCCGCTGATGCTCCCAGGAGAGGGACTGGATGGCTATGTTCTGACGTGACAAGTTGAGGGACTGAGAATCCTTAAGCTCCCATGCTCACCTGTATTGATCTCCATTCACCGTAAACAGAAAAACACGTCCAGAGGCCAAATAGAGGCAAACTTTCTACTGTAGATAAAAATGACTCTTGGTATCTGCCTCCAACAGCCTTGGTTTTTCAAGGCAGGGTCTCACTGTGTAGAGCAAGCTAGCCTTGACCTTGCTGTAACTTTCTTGCCTCCCAGCCGCTGGGTCAAGCATGCACAACCATACCTGGCTTTGCCCTTGGTCTCTCTTAGGCGGACTCAGTTCTTCTTCAGTACCTTTTTCTTTGTGGCCAGAAAGGAGAATTCGTGAAGTAATGCGGTTTGGAGTGCATGAGAGGAATGCCGTCTTCTCATTCACAGGCATAAATTGTCTTAGGTTCTGTGCTCAGTGGGAATGGATTGGTTTGCGCGCGGGGGAGCGGGGGGGGGGGGCCGAAGAGAAGAGGAACAGCGTCCCCCACTCCAGAGCTAACCCACCCTGAGGATCAGAGGATAGAGTTTTCCACTAAGCAGGGTTTCCTGAGCAACAGGGAGGCCCTCCATCCCTCACACCCACAAACCTTTTCTAAGCCCAGAAGCAGTCTTGACGTGGACATCGCTTTCAGGGTTTATGGGTGACTTCAGCGTGCATGGTTTCACTTGTGCAACAGTGCGAGGCACCAGCCTGAGTGTGCAACCTCTCCTTTTGTGAAAGAAACCAAAATTCTTCCTGTGTCTCCTCCTCTCTGGTCTCTGTGTGTTGATTGGTTAGAAGTGGCTGATGGTGTCCCTTGGAGAGCAGAGCAACCTTCCCATGGAAGGGGACACTTTGAGGTGCTGGTGTGTCTCCCTCATTTTCTATGTTCTTCTCTCTAGTAGGTCTCAAGTAGAGACAGATATTTTTGTTTTAGAGATTCCAAAGTCTATATTTTTAGTGTAAGAAATGTACCCTCTCCACACTTCATGTCGTAAATAGAACTGGGAATAAGATGTGCAATTGTGATCACCCTGTAACAATGTATGGTAGACATGAGGCCCCGGGGCAGGTGACTTGGTGTGTCTCTGAGCCCTCCTCTCTGCCTGCCCACACACATGTGTGCTCAGCTCTTTGAGTGACAAATAAAGCCCATGTTATAAACTGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032-Slc4a8:NM_021530:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAACCACGGTCTGGAAGGC
R:
ATGATGGCAGCTCTGAAGAGA
Band lengths:
352-1425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: