MmuINT0147268 @ mm10
Intron Retention
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100814450-100823968:+
Coord C1 exon
chr15:100814450-100814545
Coord A exon
chr15:100814546-100815618
Coord C2 exon
chr15:100815619-100823968
Length
1073 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ACTGTGACGTTGTTTCTCAGCCC
3' ss Score
6.18
Exon sequences
Seq C1 exon
ATGTGACCCTTCTGAGATTAATATATCAGATGAAATGCCTAAAACCACGGTCTGGAAGGCTCTCAGCATAAATTCCGGAAATACAAAAGAAAAAAG
Seq A exon
GTAAGGAGAGCTCTTGTTTGTCTTTCATTTTCTTCTGTTTTTTGGAAATTGGCGATACTGTTGAAGGTAAAATGTATGTTGCTTGTAGAACTGAATTTGTCTAGTAAGTAACAGAACTGTTGCTAACCTTACAGTAAGGCAAATAAAAATAAAAAGTTTCCAGATATTTGGAGACAGGCTGTTCTGAGCCGTCCCTCACTCCGGTCCCAAGGGCAGGCTGTAATTATTTTGGGATATGAATTTGCTTTACCGTTTGACTCCTTTAATCCACTGGGAGGATCTTTCTCAATTCAGAATTTTTGTCTCTTGTTACTGCAACAACAAAAACTGGAAAGCTGCTAAAAACCTGGATCAATACTGTTAACACTAATAAACAATATGATAGTATTGGCCCAGACTTTAACCTACTTAGCTTAGATTCTGAAAAGAGAGTTTTGTTAAACATGACAGTTTTCTTATTCTGCAAAGAAATTTCTCTGTATAATAACAGCATAGATCAGTTATAATCAGATTATTAAAGAAAATTGGAGGTGGCTTTGCCTACATTAAAGGAATGCAGTGCATAAGTTACTGATTTTGGCCCAAACACTACTTACATTTAAATCATCAGAGAAATGAAGGCAAAACTCCAATGTCTTGATACTGATAACAGTTTTTGTTAAAAAACAAGCAAGTCAGGAACCAGGAAAGCTGGCCCGCCCTGCTTTTATCTCCGCACATAACCGGGCAGGCTGCTGCTCCTGGTGTTCAGCTCAGCTGCAGGATGGGGGTACTATCAAGGTTGTTCCAGGAGCAGAGAGCTCCTCGGAGTCGTGCCCACCAGCACATGGTGTGGCAGCTTCTTCACTGAATGGGTTAAAATAGATCTGAGCTGAACATGAGTGAACACAGAATCTTGCTTCCCTCAGAGGAAAATCCAGGCAGCTGTGGGGATGTATAACACATGTGGTTATTTTTAGTTGAGAATTAGTCTACTTGTAAATGAACTTAAAATACAGCCAGATCCAAGTAGCATCTTCGGAGTGCTGAGAGAAAGAGCGCGCACTTTGTCTCACTGTGACGTTGTTTCTCAG
Seq C2 exon
CCCCTTCAACTGAGAGTCTCTGCTGAGTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTGGTCATCTCAAAGCCATGCCACATGGAAGCATTCAGTCACTCCCGGTGTGCGTTTGGAGGACATCCAGCTACCCACATACCAGCAGCCAGGCGCCAGTCGGGTCATGGTGGGGCCGCCTCCCGCTGCCTCCTTTCCTCTTCCTTCTCTCTCTTCAGAGCTGCCATCATTAAAGAGCCAGCTTCCATTTTCAGACATTTTCTCTGATACTCTGCTGGCCTGGTAAGCCACACGAGTCCATTCTGTCACAGAGGATTCCCTCTTCCGAACGATAGCCTGGGGTAGTGGCAGAGGCAGGACAAGGGCAGGCTCTCCAGCAGCCTGTGCCTTGGTTTCCTTTCTGCCTGGGAAGGGGATGTTGGACAGGCAGACACAGTAGCAGGTCTGCTGCCTGAGCTCCACCATCCAGGCATCAACAGCAACCACCACAGTGAGCTGCCTCTGGCCTGGGGTCATCTGCATCACCTCCAGAAGCAGTGGGCATAACGTTGTGAGTCCTTGGAAGATGCGGGGACAGCATGAGAGCAGGAGTTTAGCTGATGTCAGGAAAGGCCTAGGGGAAGCCAGCAGCGCTCGGAGTGTGAGCATCTTTCCCTGGAACGAGAGAAAGAGGAGCCTAACTTGCTATGGAAGCACTTAGGTTTCCAGGCCTGGAGATCTGTTCCAGGTCTGTTTTTTTAAGTCTAGGAAAGTCTTGCTGACAGCTGTTTGTAGGAAGGAAGGTGGATCGGGGCTGCTGCGGCTGCTCTGTGTGAACTGTTTGACTTGATGCTGCTACCTCTCGTGGTGACATTGTTATAACACCCTGGAGAGACCCGAGTGCTCATGGATGTCCCTTAGCTGCCTTAGTCGGGAGAACCATCATCATCCACTCGGTGGACCCAAACCGCCATCAGCCATGTGACTTCCTAATCATGGGTTTCTTTTGGTTGACAAGTTCTGGCTCAGGTGTAAAAGCCACACGAAGAAATGAGCTGTAAGCGGTGGCATCACTTTGGATACTTAGTTTAAAAGTATATGTGTGATTTTCTATGTTCCAAAACTATCATGAGTTTTTTGGCCCGAGCAAGTGTAGACCTCCCCTTCCTTTGTGCCCAGACTGTGACTAGTGAGCTGGGACAGTCTCTGTCCAGAGACCACACACACACAGTGAGCTCTCTTCCTCTCCTGGCTGAAGAGGCTCTACATCATTCGATCACAGTTTGCTCCCCCTCAGACTCGCTGAAACATCTAGTCCTTCTCTGAAGGTCTTAGGTGTCGGGGGCCACCCCGTGTTGCCCGTTCCTCCCTACCTGTCAGGACCACTGCCATATTGATGCAAGATATTTGACAATTGATACAGGACAGACACGAGCCACACAGAGCCGGTGTCTTCTGTAGAATAGTGGTGGGCACTGCTGTTCAGGGCCTGTGGGATGAACGTGACCCTGCTTCCGATCCCAGAATGGCCTCTGGAATGTGGGTTTGTCTGGTCTTTACTCATGGGAGATGTGCGTTCCATCTGAGCAGCCACCCTGGCTTGCTCTCAGGTAGCACATACTGCAACAGGTGGGTTTCCTAGAAATCAGTGGACATTCAAGTCTCTGTTAGCCAAACAGCCCAAGCATGTCACTTGAGGACAGATTTAATAAGCATAGCCTTGCCCACCTTGGATTAGGAGCCGGCCTGTCAGTGGGAAAGGTTTTTGATGCCTTCCTGGCCCTCCTCACACTTCTGGAACTCGAGTCTTTTCTCACTGCTTGCATTCTCTGGGAACACCCCTCTCTTCCCGGACTGGTTTCTCCTCTGTTTTTCCTGCCACCTTCTGTGTAGGGAAACTGATGACTGCTTCACCCTGCCCTGGCCTCAGTGCACTTGAGAGACATAATGGTGAGGACCCTGACGTATGAGGGAGCCAGTGACTTGTCACTGAAACTTACTCTTCCCACACGATGACGCTTGTGCAGCCTCCTGTGAGCTATGCCCTGGGCTGGAGGGTGGAGGCTGCTCTCGCCCGCCCTGAGCAATGCACTTGTGGAGCCTCATGCCCATGTTTGCACTGGTCATCTCTTCTATGACAAGGGTCGCTCTCAGACACGTCTTGAATGTGGCCAGCTAATGTCATGACTTGCTGGTAATGTCAGCTGGTGGTGTGAGTGGAGTTGGGGGGCTGGGACTCAAGAACACGTTAATTGAAGCCTTGGCTCTGAGGGAAAAGATGGAGGGTTCCTAAGTGGCCAGTTGCTTCCCGATGACCATCAGGGAAGGGTTGCTGTAGAGAAAGGTGAAGAGCTGGAGAGACGGAATGTGCAAGTGCCAAGTGTGTTTGGTTGCATAACACATGCAACTTGGGAAGCTTTGTCAGGAGGCTCCGGACTTTCCCACTCCCAGCCCCATGTTGGGTCTCCTTAACCATGAAAACCTGTCTTCCCGATAGAGGGAAAGTGAACCATCTCTCTCCAAAAGACAGTTGCGGTTTCTCATTGTCGGTGATGGAGCAGACTTTTAAATTACTCACTAATGTTGGATGAAAATGTGGTATTCACTAAGTTCCCAGCCTGCCCAGACTCTGCAGAGTCTGTGGTTTATGATCGTCCAGAAAAGGACAGTTCCTAACTCCACTTTTCCTTGACCTGCTCAGCTCAGCAGACCTGCTCCTTAGTGGGGAGGCAGGGGTTCTCCTTGTATCCTGTGTAGTAGGTGCAGTGTCTGTCCTGCCTCTCCACTTGTCCTGGGTTGTAGTGAGTAGCAGACACACTGTCTCCTGTGTGTCTCCCACCACTGGGCCGCTCGATGTCCCTGAAGATCTTTTGATGTAATTTAATCGTATGGGTGTTTTACCTTCACACAGGCCTTTGCACCACATGTCCCCCATGCTTCAGGAGATCAGAAGGAATCCGATCCTCCTGGAGCTGGAGTTACAAATAGCTGTGTGCTTCCATGTGGATGCTGGGGATTTAATTGAACCTGGGTGTAGCTGGTCTTTGCTACTTTGTGGGTTATTTTCTCACCCTTTGCTCCCTCTCCCAGTTTCACTCCTTGACACTAGATAGGACAAAAACGGGGGGCGAGAGGGAGAGGGAGAGAGAGAGAGAGATCGAGATCAAGAGAGACACCCCTGTATCTAAATTCCTTTCTTCTTTGAACACTACGAAGAAACCACAACCAACCACACACAACTCCCAAACAACCAACAACCACCCATCCTGCTTTTTGGGAGCCTAGCATTTATAGACTTTCTGAAAAGTTCCTAGAATTCCAAAACTTGACACAATGCCAGAGACTGTCTGCAGCTGGCAAAACCACACTTCTGCTAGAGCACTAGGCAAATCATGTCAGCTGCTGCCGACACTCCAAAGCAGCCCCACATCCCCACACCTGGGGACTAAAATGATAACATATTCTTATATTTGTTTTTTAAAGAAACCAGAATTCCAGAGTTCTCACCACGATTCCCCACTTCTGTTTTAAGTCATTAATTGTGCTGTGTATATCAGGAAATTATAAACAGACATTTTCAAGGAACTGAGTGTTCAGGTTAGTGCCAAGGTGTTGAGGAGACCTCTCCTGCTCGGTCCTAATCTTTATCAGTTTTGATGGTATCCACAGCTTTTCGTTTCCTGTGGAAGTATAAACAATTCCCCATCCCCAATGCAAAACTTTTCTGTTCTAATATTAACACATCTTTATTCTATATTGTAAAAAATTCAGTTTTTCCTCTCGGCCCCTGCTCCAGGAATGACCACTCCAAGACTCCTTATTATTAAATGCCTTGGCCAGAAGCCTTGCCTCATCCATGACTGGCTCGTAACCTATTCAACCCATTCAAACTCTTCTATGTCATCCTCATGGTTACTTCTCCTCAGTCCCGGCTTGCTTCATCCTTCTCACTACCTCCTCCTTGTCTCACTATCTCCCAGAATCCTCTCTTCCTGCCATTGTCCCACCTCCTATTTCTTGCTTCAGCTCATTGGCCATTGGTGGTTTTTATTGACAAGAGATGCTAATAAGAGATTCTACAGTACATAGGCTGATGTAATTCCACAGTTTTTTTTCTAAAACCCAGAGTATCTCAACTGCTGCTGTTCCTTTCTCATTAATATTCAGAAAATTTAAAGTTAGCAGAGAGTAATTGTCTCTTTTTTTCTCTTTGCTTTATAAGCATTTCCTTTAGGTAAAATGAGATCTTTCTACAACTGCCTGTCCTGTAGGATTGCATGAATATTAATCTGAGCACTGCACAGTTGTAGAAGAGCCCTTCCCCATAGACTGATGGGTCGGTCAGAGTCCTTCCCCATAGACTGATGGGTCGGTCAGAGCCCTTCCCCATAGACTGATGGGTAGATCAGCCACATCAGGTCTTAGCTTTCCTGTTAGACCTTCTGGTCCCACACATTTCACCCATTGCACACTTTGTTTTATCTGAGATAAATTTCCGATTCCTAGAAACTGTATAAACCTTCCAAAGTGGCCATTCTGAATTCCAAGATTTTTTTGTGAACTGATAGTTACATCAGCGCCTGTATCCACAAATTTGTCTACTTCAGTACCTTTTATGTGAAATTTTAATATTTGCCTCTGATCATTAACAACTGTTTGCCGGAACACATGCTTTTCAGTCCTTTCAGACCCTCCTGTTCTCTCTACTGGAGCAGCTTTGTCTCTGGGACAGGGAAACAGTAGCAGCCGAACAAGCCTCTATCACCTGCATTAATTTGCATCTCTCTCCCTCTCCCTCACACACACACATGCCATAACTTTAATTTCTCCTTTGAAATCTTCATGTATGATTCCTGGGTGCACAGTGAATCCTTGGGGAATCAATCCATCTATTCTCAAGATCATCCCACTGTCTCTGCAGGCAAAGGAGCACGAACTCTCTCGAAGTTTTGGATATAGAGTAATGCTTTTCTGTGGCCGAGTCTAGAGCAGCACTGCCTGCAGAGGTGTTAGATCTCCAGTGCTGAGTGCAGGTTTTAGTCTGCGTGTTATGGCTTGACTGGAACAGCTCACAGTCTTTGCTTGGTGGGGAGCTAAGCTAGGCCCCCAAGGCTGTTTCCTTGAATATCTCTTTTGGATCTGCATTCCGGAATCCAGTGGCTGCCTTTGCCAAAGTGCATACACATTGCAGGAAGCCTACGAGTCCTGTTTCAGATTCAGGAAAACCATTGCCTCTAGAAATGACTGATTCACTCTTCTGCTGCAAAGTACTGTCTTTCTCCCAGTTAACGCACTGGGTGGGTATTTTGAGGTCAGAGATTTTTAGCTCTAGCTTGGCCTGTTCTATTAGCGTGGTACACATTAGAACCAATATCGATCACATCCCTTATCCATTCTGCCATAGACGCTTGCTCGAGCCTTTAACGTTTCGATAACTTTTTTGCATTTGGTTATTCGCCTTTTCAACAACTAAGGCCTCTATCAACACCTGCCTTCATCTTGATCTGGTACGGCTTCCTTCACAGCTGAGACTAATCTTTGTAATCAGTGAAGGCTTCTCAGAAGCCCTGTATAATCTTTATAAATGAGGTGGTCTTTTTCCTGGGCCCCTCAAATTTGTCCCAAGTTTTAAAGCCACCAAGCAACATTGTTCAGTAGTAATATTATGTGATTGAACCTGTTCTTGTATATCAGAGCCCTGCCCTTCACCCAGCAATGGTGGAGCTGATGGGATTCGGCTCAGAGAGCTGCCGCTGGAGCTGCTGCTTGTGGTGCTAAGGACTAGAGAATGATGGGAAAATCCTACACTGAGTGGCTGAAGCAAGGCAAGCTCCAACAACTTTGTTTTCTCCTTCAGCTCGTTTGTACCCAAAAGTGGTCACCACAAAACACTTTTGAAAAACATGTTAAAATCACTACACAAACTGAAATTACAACAGGATTACTGCTTGCATATCCTTCTTTTGGAACTTTGACCTAACTCTACATTCCTCATCTGTCTTTCTCTCCACAAGTTCACTGCCACCCCAAAGCAATAATTCTCTTGTCATAGACTAACAAAGCTTAAGCAGACCAAGTAGAGAGTAGTATGTTTCTCCCAGTGCTTAGATGGTGACAATCTTGTTTGCTAAGGAACAGGTCATCTGTCTTGCATCTTGTTTTTGAAGTCTTGGTCAGCTAGACTGGCTAGTCCTCTCTCTCTGTTCTTACATACACAGTGAAGTCCCCTGCTCTTCGTTCATGACCTTCCTTCTCATGGTGCACACAGAAACCAGTGCCACACCTCTGGATCACAAGATCAAGGAACTTAGACCCAACCTGGAATGAATGTCTTGTTTGATAATTAACTTGTCCCCAGCCTGTTTTTCTTGCTCCTACAATCGCGCGCTTGCAACGCTGAGGGCTCACTGGCGCCCTCACCTGTGCCAGTCTATGAGAAAGGGCCACACTCTGTTCTCGATTCGAACTTTGAACTTTCTATCAAATACTCTTAACTTCCCCAAAATTTTAAATTAAACTAACTTCCCCAAACTACTTTAAATTGGGAATTCCATAAAATCATTAATTCATGTAAGCAGCATTATCTCAGGAATGTTCATCTTCAGGTTGATCTTCAGGAAACTTGCCCCACAGAGTGGGCTACCACCCAGAAGTGGTCACTCCAGGCTACGGAGGCAGTGAGTGTCTCACTATGTCAAGTACATGAGGGATATAGCAGTGACAAACATGAGAAGGCACAGCAGTAGCAAGAAGCATCCCTGGGACGAAGCCCCTAGGGCTGGACATCTCCAGGGCACACCCACCCATCACAGCCAAGCAGAGCTGCAGGCTCCAGGGCACACCCACCCATCACAGCCAAGCAGAGCTGCAGGCTCCAGGGCACACCCACCCATCACTGCCAAGCAGAGCTGCAGGCTCCAGGGCACACCCACCCATCACTGCCAAGCAGAGCTGCAGGCTCCAGGGCACACCCACCCATCACAGCCAAGCAGAGCTGCAGGCTGGCTCCAGGAAGCTCACTTGCCCACTGCAGCTCCCCCTGCATGGCGTTCACCGTCCCTTGGAGGAAAGAATCCCACTCGGAGCTCCTCACTGTGCCACAGCTAAGGCGGCCGCTGATGCTCCCAGGAGAGGGACTGGATGGCTATGTTCTGACGTGACAAGTTGAGGGACTGAGAATCCTTAAGCTCCCATGCTCACCTGTATTGATCTCCATTCACCGTAAACAGAAAAACACGTCCAGAGGCCAAATAGAGGCAAACTTTCTACTGTAGATAAAAATGACTCTTGGTATCTGCCTCCAACAGCCTTGGTTTTTCAAGGCAGGGTCTCACTGTGTAGAGCAAGCTAGCCTTGACCTTGCTGTAACTTTCTTGCCTCCCAGCCGCTGGGTCAAGCATGCACAACCATACCTGGCTTTGCCCTTGGTCTCTCTTAGGCGGACTCAGTTCTTCTTCAGTACCTTTTTCTTTGTGGCCAGAAAGGAGAATTCGTGAAGTAATGCGGTTTGGAGTGCATGAGAGGAATGCCGTCTTCTCATTCACAGGCATAAATTGTCTTAGGTTCTGTGCTCAGTGGGAATGGATTGGTTTGCGCGCGGGGGAGCGGGGGGGGGGGGCCGAAGAGAAGAGGAACAGCGTCCCCCACTCCAGAGCTAACCCACCCTGAGGATCAGAGGATAGAGTTTTCCACTAAGCAGGGTTTCCTGAGCAACAGGGAGGCCCTCCATCCCTCACACCCACAAACCTTTTCTAAGCCCAGAAGCAGTCTTGACGTGGACATCGCTTTCAGGGTTTATGGGTGACTTCAGCGTGCATGGTTTCACTTGTGCAACAGTGCGAGGCACCAGCCTGAGTGTGCAACCTCTCCTTTTGTGAAAGAAACCAAAATTCTTCCTGTGTCTCCTCCTCTCTGGTCTCTGTGTGTTGATTGGTTAGAAGTGGCTGATGGTGTCCCTTGGAGAGCAGAGCAACCTTCCCATGGAAGGGGACACTTTGAGGTGCTGGTGTGTCTCCCTCATTTTCTATGTTCTTCTCTCTAGTAGGTCTCAAGTAGAGACAGATATTTTTGTTTTAGAGATTCCAAAGTCTATATTTTTAGTGTAAGAAATGTACCCTCTCCACACTTCATGTCGTAAATAGAACTGGGAATAAGATGTGCAATTGTGATCACCCTGTAACAATGTATGGTAGACATGAGGCCCCGGGGCAGGTGACTTGGTGTGTCTCTGAGCCCTCCTCTCTGCCTGCCCACACACATGTGTGCTCAGCTCTTTGAGTGACAAATAAAGCCCATGTTATAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032:ENSMUST00000023776:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAACCACGGTCTGGAAGGC
R:
ATGATGGCAGCTCTGAAGAGA
Band lengths:
352-1425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types