GgaINT1025753 @ galGal4
Intron Retention
Gene
ENSGALG00000008423 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chrLGE22C19W28_E50C23:850509-854645:-
Coord C1 exon
chrLGE22C19W28_E50C23:854534-854645
Coord A exon
chrLGE22C19W28_E50C23:854358-854533
Coord C2 exon
chrLGE22C19W28_E50C23:850509-854357
Length
176 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TTTCTTTTTTTCCCCCTCAGTTG
3' ss Score
10.76
Exon sequences
Seq C1 exon
AACTGACCCTTCTGAGATCAACATCTCAGATGAAATGTCAAAGACAACTGTGTGGAAGGCTCTCACCATGAATGCAGAAAAACTCTGAATCCGAGGAGGAAAAAGGTAAAAG
Seq A exon
GTAATGGTAATGGTGAATGTGACCGTGCTGCTCTGCAAGCCACAGTGCCAAAGAGCTCATCCCCAGCAGCAGGCAGCAAGCACCGGGGGATGTTTAGATTGAAGGATGGATGATTTTAGAGGTTTTTTCCAACCTTAATGATTCTCTTTCCCTCTTTTTCTTTTTTTCCCCCTCAG
Seq C2 exon
TTGTCCTCTTTAGGGATCTTGGCTTTGAAGGAGAGGAGCAAGAACGTGACTCAGGGATGAGCCAGCGCAGCTATGTTGGGTGGAGGAAGCAAACACGCACCCTCCCTGGTTCTCTCCTCCAAGTAGCAGGATTCCCATTAAAGCCATTCAAGACGTTTCCAGTTATCCTTGGTGTGCTTCAGGCATTCAGTATCTCTAGACCAGCAATCTGAGGTGCACCTCGCTGTCAGTGGGAGCTCGGTGTTGCTCAGCCTCCGTGTGTACGTGTGTGTGTGCGTGTGTTGTCGCGGTCTGTGGTGGTAGAGGGGCAGCTACCGCTTGGTCATTCAGTGCTATCTAGTTTTTTTTAATATCTAATCCCCCCCTCCCCTCCCCCATTTCCCTTTTTCTGTCCAAATATAAACTCTGAATGTACAAAATAACTTTCTGTTATATTTGACGCATTCTCCACTTCCTTCTTCGTGACCGCCAGATTTTTGTTTCGGTTTGGGGTCCTTGCTTGGATTCGCTCTTCCCTTCTATATCTCTTACTGGTGTGGGAGGGATGTCCTCTGTGGTGGGAAGTGCAGAGAGGAAGGAGAAGTGTTTGTTGCAGTTTTGCCATCATTTGTTTGCTTTGACTCCAGAATCAGCAGGTGCCCACAGAAGGGGTTGGAACTGAGTGATCTTTAAGTACCCTTCCAACTCAACAGTCCTATGGTTCTATGGTCTTTGCGGTCTCTTCCAACCCAGTCTTCCTATGATTCTGTCGCCTTTAAGATCCTTTCCAACCCAACCATCTTATAGTTCCATGATCTTTGAGGTCCTTTCGAACCCAACCATTCTGAGCTTCTATGATTTTTCAGGACTCTTCCTACCCAAACCATTTTATGGTGCTTTGATTCTAAAAGACAGAAATGCCACCTTCTTGTCCCTGGCTGTAAGCTGATATAAGGAAACTCTTAAAACCCACTGCTTTGAATAAACCATATGGTCACGGGAGCAGCCGGCCACATCCATTGCTTTCCTTGCTTTTACATCCCCAGGATACTCTGCTCATTTTTCTTTGCCTGCCCGCCCCCCCCAAGCAAAAAGCCTTCTCTCCCTCAGGGTGGTGTGGACCAGCAGGAAAATAAATGATCTTCAAGGTCCCTTCCAACCCAACCGTTCTATGATTCTATGAAAGCAGGAAGAGGTTTTTCCTTTTTGCTTTCCCTGCTGCCTTGCAGGAAGATGCTGTTGAGCAGGGATGGTACCCATGTGCTCCTCACATTCTGGGAGCCATTGGACTGTGGCCTCACCCCAGAGACAGAGTCTTTTGGGTGGCCGTGGAGTCTGGGAGGAAAGGGAACCCAGAAAGAATCCCAATGAGTTGTTCTGTCCCCATGTGAAGTGGCTCCAGGCTCTTGGAGCTGCTACCGTTGCCTCATCCCATTCGCTGTCCCGTCCGTTGGTTTGACTTTTCCATGCATCAGACAAACGTAGAACACTAATAAATGGGTGGGGGGAAATAACCCTCTGTAAGGATGTCGGTGGTGCATCAGCAAACAGGGCAGAAAATCACAGATTTGGATTTGCAAACTGTGCTTTGGTGGCTGGTGGTTGTAAGGGAATGAGAAAGGGGTTTAGCTCTTAAAGGGGAAAATAAAATAGAGTTGGAGGAAGGAAGAGATTCAAAGCTTGGGTTTGCCCATTGCATGAGAGCAGTGCAGCTCTGACCTTGGAATTATTCACCCTCTGCCTGCAGGATCTCTGCTTTCTGTCTATTTGCCTGTATGTATGAGCAGAAAGTCGGTCCCTACTCCAGTCCCTCCCACCAGGGACTGGGGCCAGGGGGTGGGACTGTTTTCTACATGCACTCAGTGTCCCACAGCTGGCATTGCTCCCTTGGAGGACCAGAAAAGTCCCAGCCCCGAAGGCAAATGTTGTTGGTTCCTTATGTTAAAAGCAAACCAGGCTTCCTCAGAGTACCCTGGCACAGAGTACGCAAACATCTGGATGTCAAATGATTTTTTCCCATGTTTTCAGGCCTAGTCTTTTCTCCTTCATTTTATTTTTAAGTTATTATTTAAAAGGAAGCAGAGTTCTAATTCGTAATTCTTGCAATTGCAGCTGCGGCTCCTGGCGCTGCTGCTCCATTTACTGACCACCAACCCATGGATTGCTCTGTATGAGCGGGCATGGTGAGGCCGGGTTGGGGTTGGTGATCTTAGAGGTCTTTTCCAACCGTAATGACTCCATGATTTGGGGAGGATTTGATGTTTCCATGTAGGGGGCGGGGAGCATCCCAGAGGCATCCCTGGAATCAGCGTGGGATTAAAATCACTTCCTTGCAACGCGCCATGTTGGTTCGGTTGGCAGCAAACTCCATTCCCCCAATGCAGGATGGGTGCTGGGGGTCATCCTCATCTCTGGTGCCTTAAAACAGCTCCTGGGGCCATGCACAAGGGCAGTTCTGTTACATTAGGGGGCTTTGGAAGCACTGGGGGTGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGATGAAGGCTCGCCACCAGCAATGCGAAAAGCAAAGCTCCCCCCTCCCATAGGATAAAAAAAAAAGAATCCCAAATGAATCCTATGGAGAGCCCTGTGTAAAGAAGGGTGGGAGGAAAGAGGAAAGTAAGAGGGTAATAAGTTTGGTGCTGGCACTTCTGTTTTCTCCCGGTATATTCTCCCCTCTGCCATTCTACATGTAGAAATAGAGAAATTATTTTTTGTTCCGGAGATACTGAAATGAATTTATTTTTGTTGCAAGAGATGATCTAGTTTGGAAACGCTCAGTGTTGTAAATAAAACGGGGAGGAAAAGAAAACATCCGACCAAATCTGTGTTGTCTCCCGGTTCCGCATTTTGATTCATGTATTTTTAAAGGATTTGATTTGTTTAGGGCTCATTCTGTGAAACCCAAATGCCATCACTCTGTGTCGCTGTCTCGTAGTTCCTGTCTCAAATTGTTGCTGCTATTGACCTGTTCCACCATCCCAGCCCCATCTGCTGTGGGTTTTCTCTGTCGTTCACTGACCAGGATGGGAAAATAACCCAATAAAATCTGTTTGTGTCTCTGTGCTGCTCTGGTGGTGTCTTTCAAAGGGCTGTGGTGCTGATGGAGAGGATTGGAGGTGTTCCTGGAGACATCTGTGGATGTTTCAGACAGGTGGGGGACTGAGCAGCGCTGACTGGGGGAAATTCATCCCCCTTGGGGGCATGTGTGCTGATGGGAAAGATGTGATATTATTGGGTTGGTTTTTTTTTTGAGCACCATCACTTTATGTCCTCGATCTGTAGCAAAACCCCATCCAGAGAGAGCAGTCCCTCCATCGTGTGAGGTTTTCTTTTGGCACCCCTTTTCAACACAAACGGGGCAGAATTAAACAAAATATGTTCTACTTGTCTTTCATATACGCCTTTATTTAATCTTAGAGCCATAGGTCTGAGCAGATGGGATACTCAGGGGGGTCAGGCGGGCGCATCCTGGTTACCATCTACCTAAAACTGAAGGAGTTTGGAATAAAATGGGGCACCTTGAACCAAGCCCGCTGGTCAGAGCTCGGCTCTCCCAAAGCCCTCAGCCAGCAGCATGCAGGATCCCCATGGGGTGCTGGGGTGGGTCGGAGCCCCCAGAACCACATTTAGGAAGGGCAGCATGGCAGGAGCGGGTGCAGAGGAGATAAATTGGGCATGGATGCTGAGCTGCAGCGCTGATTTCAGCAGGGGAATGGGAAACACCGTGCGGGTTCGTGCAGTTGTTTCATGGATCAGTCCTTCTGCAGAGGGTCTGATTGCTGCTGGTGATGCGGGGGTCCAACAGCCGTGAGTGGATGCTGGAAAGCCTGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423:ENSGALT00000013720:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.345 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGAAGGCTCTCACCATG
R:
GCCTGAAGCACACCAAGGATA
Band lengths:
247-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]