GgaINT0000952 @ galGal3
Intron Retention
Gene
ENSGALG00000014631 | ACVR1B
Description
NA
Coordinates
chrE22C19W28_E50C23:9070-9794:-
Coord C1 exon
chrE22C19W28_E50C23:9564-9794
Coord A exon
chrE22C19W28_E50C23:9238-9563
Coord C2 exon
chrE22C19W28_E50C23:9070-9237
Length
326 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
ACACCGCTTTCCTTCTGCAGACA
3' ss Score
10.8
Exon sequences
Seq C1 exon
GTTTGCCACTTTTTGTGCAGCGGACCGTGGCTCGGACGATCGTCCTGCAGGAGATCATTGGGAAGGGCCGCTTTGGGGAGGTGTGGCGCGGCCGATGGCGCGGAGGTGACGTGGCTGTGAAGATCTTCTCTTCCCGTGAGGAACGTTCCTGGTTCAGGGAAGCAGAAATCTACCAAACCGTTATGCTGCGACATGAGAACATCCTGGGCTTCATTGCTGCAGACAACAAAG
Seq A exon
GTAAAACTGCTCAGCCCTGACAGCACAGACCCCATCGGCGTGCTGCTTCTGAGAGCTGCATCGCTTGGCTCACACGTGCAGTTAAGTGCTAAAGAAAGCCATCAGCATCCTGCTGCGTGTGCGAGTGTGTCCCACTGCAGGGTGGGAAGATGAAAACTGTTGCATAGAGACGTGTGTGTGTCGTGTGTACCTTAATGCTCCTCACCTGGCCTGCCCCAGGCTGGCTGCTGAGCTGCAGCCTTACCCAGTGGTTCTGTGTGCCAAAGGGATGCGCAGCGCTCAGCGGCTCTGCTCTGTCCCTGAGAAACACCGCTTTCCTTCTGCAG
Seq C2 exon
ACAACGGGACGTGGACACAGCTGTGGCTCGTCTCCGATTACCACGAGCACGGATCTCTCTTTGACTACCTGAACCGCTACACGGTGACCATAGAGGGGATGATCAAGCTTGCTCTGTCTGCTGCCAGCGGGCTGGCCCACCTGCACATGGAGATCGTGGGTACTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014631:ENSGALT00000020492:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
A:
NA
C2:
PF0006920=Pkinase=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCTGCAGGAGATCATTGG
R:
GTACCCACGATCTCCATGTGC
Band lengths:
354-680
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]