RnoINT0012768 @ rn6
Intron Retention
Gene
ENSRNOG00000006934 | Acvr1b
Description
activin A receptor type 1B [Source:RGD Symbol;Acc:735207]
Coordinates
chr7:142844398-142847819:+
Coord C1 exon
chr7:142844398-142844628
Coord A exon
chr7:142844629-142847651
Coord C2 exon
chr7:142847652-142847819
Length
3023 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
CCTTGTCTTCGTTTCTGCAGACA
3' ss Score
10.83
Exon sequences
Seq C1 exon
GGTTACCCCTTTTTGTCCAGCGCACAGTGGCCCGAACCATTGTTTTACAAGAGATTATCGGCAAGGGCCGGTTTGGGGAAGTATGGCGTGGCCGCTGGAGGGGTGGTGATGTGGCTGTGAAAATCTTCTCTTCCCGTGAAGAGCGGTCGTGGTTCCGGGAGGCAGAGATCTACCAGACTGTCATGCTGCGCCATGAAAACATCCTTGGGTTTATTGCTGCTGACAATAAAG
Seq A exon
GTACATGTAGTCTCCCGTTGCTGCCACTCGGGGGGCGCTAGCGAGGCCTGCTGCTCTGCGGTACACAGAGGAAGTCCTAATAAGACCATAGTTCCAAAGCCACTTTAAATGTGGAGCCTTTTATACCAAGAGGTTCACACGGGAACCTGGGTTGTTGCTAAGAAGGCACCCCGATGCCCCCAGCCCCGCAGGCCCACCTTCCTCTTATCTGTACCCAGCGTGGCCTCCACTGGGCCTCCCATGTGCTTGTTTTGAAAACTGCTACAATAAGGAATTATGTTCTCACCTGCCTGGGCAGGAATGGTGTCAGAGACACATACACATTCTACAACACAACACAACACAACACAACACAACACAAGCATTGTGCACACTGTTGTGGGGAAGCCACCACAAGCAGACACTGCCTTAGAGTCACCCAGCAGCTGTGAGACTAGTTTCGCCTGTTTTATACCTAAAGCCCTAAGTTACTGCTGCCAGTCCTCCCTCCTGCCTCTCCCCCCACCCCCATCTTTTCTTTCTGCTTTGTTATGGAGGGCATTATGAGGTAGAGTCTTCGCCATAGAGGACAGCCCAGCCTCAAATATGCAGTCTCCTGTCTCCGCCTTTTAGTCACACGGCAGGAGCAGGGGAGGAGTAGTGAGAGACCAGGCTATGCTGGGCTTTTGTGCATGCCCCCGCGCGCGCGTGTGCGTGTGTGTGCGCGTGCGGACGCATATGGAGACCAGCAGTCAATGTCTTTGTTCTCCTGTTTTTATTTTCTGCCCTATGTTTTGAAATAGAGTCTCTCACAGAACACAGAGCTCACTGAGTGGCTGGCCTAGCCACCAGTGGATCAATCCCTGTGATCCTCCTGCCTCTACTTCCAGTCCAATGCTGGTGTCACAAGAACATGTGTCACGCCTGATGTTTACGTGAGCACTGGGAGCCTAAACTCAGGCTTGCACAGCAAACGTGCAAGGACCATAGTTGGTGCTGAAGAACAAGTAGTAATTAGAGATGAGTATTAATTTAATATCACAGCATCTCTTGGTCACTGTGGGCCAGGTTTCTACCTACAGAGACCGACCCCAGGGAAAGAGGGGCAGGTACCTCTGGTACCCCGGAACAGAGATATTATGAGGGCCCTGGGTCATGTTTAGAAGTGTCTGGTGGTTGTGACAATACCTACAGGCTAGTGTTCACAGGTCCTATGAGGAGTGCCACCTGATCGCATTCCTCAGAGTGCTGCAGGGCACCCACAAGCTTTAAAGAGCCTTGGGTTTTAAAGCAGGGGAAGGAGACAGAGTCTCAGAGCTCTGAGGAGCTGCTGCTAGCCCAGATGTCTTAGAATGAGTAACAGCCTCCACCTGTCCTCTGGCGAGCCATGGCCTCAGAAAGGAGTTGCTGGTTAGAATATGGCTCCCGTTGGGGTCAGAGGCGCCAACGTTCAGACGCTTCCAGCAGCCGGTCTCTATTGATTCTGGAAGCTTGTGTGACTTGGGATCTGGCTTGTGGAACCTAAGTTAGGGCAGAAAAAGAGGGAGTCACCCCTTTTTTTCTTGCCTTGTTATCATGATATATCCAATGTGAGGCCCTGGGATTAGCACGAACCTAGAATTTGGGAGCTTTCGCCTGAGTCTCCAATCTTCCTAGCAACAGCAACAAGGACACCCCTCCCCCATCGGATACTGTCATTTTCTCCTCTCCCTGCCTGCCTTCCTGCCACCCCAAGTGAAAGAGAGACCAGCGTGTTTCCTGCCTCCATTGCTTTTCTGCAGGGCAAGATGGCTTCTGTGGGAATGCTCAAAAGTGGGCTGCACACGCATGGCAGGCAGAGCATTCTTGGCTCTGTAACGGGTGCACAAATGGGATCTTTCTGCTCTTGCCATGGCCCCTGGCCTGAGGATGGCCACCAACTGGAAGGAGACTTATCCAGTGAGACAGCTGCTGGGCAGGCTCTCCTCCTGGACGGTGGGTAGTGGGTGGAGCTCTTTGGGTCTCCTGTCAGAGCGGGAGCGGGAACGGGAACGGAGCTGAGCCAGTGCTTCCCTCAGTGCACATTCTTTCCCGGCTACCACACATCCCAGATTGGGCAGTTAAGCAGTGTGCTGTTGAGAATTGTCCCTGCTGACCGGTCTCCTGTTTGCTGCTGTGATGAAATACCACGACCAAGTCAGTGGCACTCACCTCTGATCCCAGCACTGGGGAGGCAGAGAGGCAGGCATAGAGCTCTGAGTTCAAGGCCAGCCTAGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACGGAGAAACCCTGTCTCAAAAACAAACAAACAAACAAACAAACACAGGGCTGAAGAGATAACTCAGTGGTTAAGAACACTGTCTGTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTATAGTGAGATTTGGTGCCCTCTTCTGGCATGCAGGTGTACATGCAGATAGAGCACTTGTTCATAAAATAAGGAAAGAAAGATATCCTAAAAAACACAAAACAAAACAACAATACTAAAGATAATACCATATAACACTACTACTACTAATAAAGACACCAGGACCAAACCAGCTTCCCAAGTGGTTCGCATGGTCCAGGTGGTGAGGCAGAGGCAGAGCTGAGAGCTCATAGTTTGAACTACAAGCAGAAGGATGGCTTGTGGCTTTTGAAACCCCAAAGCCTGCCCCAGACATACTTTCTTTAGCAAGGCCCTACCTCCTAGGCTTCCCAAAGAGCCACCAACTGGGGGTCAAGTAGTCAAATGCCCAAGACTGTTATGGGGAAGAATTTTGTTCAAACCACCACACACAGAGATATGGGAGCAAGCCTAAGAGAGAAGTGAACCCTATCCTCCTTGGAGGTTGCTGTGGGGAAGCAGGGTCAAGGAGCAGCCAGAGGTATAGAGGCAGGAAGTGCACATTCAGGTCCTCCTGAACCTGGCACTGTGTGTGTCTTGTCCTCTTCTGTGTTGCATAGCGTTCCTTCTGTGTTCCTTGTCTTCGTTTCTGCAG
Seq C2 exon
ACAATGGCACCTGGACCCAGCTGTGGCTTGTCTCTGACTATCACGAGCACGGCTCACTGTTCGATTATCTGAACCGCTACACAGTGACCATTGAGGGGATGATTAAACTGGCCCTGTCTGCAGCCAGTGGTTTGGCACACCTGCATATGGAGATTGTGGGCACTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006934:ENSRNOT00000009345:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
A:
NA
C2:
PF0006920=Pkinase=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]