HsaINT0003350 @ hg19
Intron Retention
Gene
ENSG00000135503 | ACVR1B
Description
activin A receptor, type IB [Source:HGNC Symbol;Acc:172]
Coordinates
chr12:52374753-52377950:+
Coord C1 exon
chr12:52374753-52374983
Coord A exon
chr12:52374984-52377782
Coord C2 exon
chr12:52377783-52377950
Length
2799 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TCATCTGTGGTTCTCTGCAGATA
3' ss Score
11.24
Exon sequences
Seq C1 exon
GGTTACCCCTCTTTGTCCAGCGCACAGTGGCCCGAACCATCGTTTTACAAGAGATTATTGGCAAGGGTCGGTTTGGGGAAGTATGGCGGGGCCGCTGGAGGGGTGGTGATGTGGCTGTGAAAATATTCTCTTCTCGTGAAGAACGGTCTTGGTTCAGGGAAGCAGAGATATACCAGACGGTCATGCTGCGCCATGAAAACATCCTTGGATTTATTGCTGCTGACAATAAAG
Seq A exon
GTAAGGGCTGGGCTTGGATACAGCATTCCCAGATAGAGGATGCTAGAGAAAGTGCATAGCTATGGGGTGCACAGCTCTGTTTGCCTTCATCATTGTAACCCGTAGAAAGAAAACTTGAGTAAGGTCAAGGTTTCCATGCTTTCCTTAAAGTGTGGAGCCTTTTATTCCATGAAAAGGTTATACAAAAATCCAGGTTATCAAGCAAATAAACAAGCAGTTCTTACTCAGATAAACAAGATACACCCCCTCACCCTACCTGCTCAATTTCTCTTTCTCCACTCCCCCAAACCCACCTCCATTGTAGTTCCTGCAGGGGGTCCCGTAAGCTTATTTTGAAAATCACTAGGATGGGCTGGGCGCGGTGGCTCACGCATGTAATGCCAGCACTTTGGGAGGCCGAGGCAGGCAGATCACTTGAGGTCAGGAGTTTGTGACCAGCCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATACAAAAATGAGCTGGCCACGGTGACACCTACCTGTAATCCCAGCTATTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCTGGAGGTTGCAGTGAGCTGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAGAAAAAAAAAATCCCTAGGATGAGGAATTGCGGCCTCAACCCTGGCAAGGAGGATAACGACAGAAAAGCCTGTAGTCCACGAAGTGTCGCCTTCGGACTCTGCTCTTGGTCAGTCCTGTCCCTGAGGATTCTTTCCTTCTTCCTCTCCCTTTTATTGCTTTAGTTTTTGAATCTCTTATGTGCCAGGCACCTCCCTATGTTTGAGGACCTCATTGACTAGCAAAGGATGACGAGTAAGGGTGATTAGAGGAGGTAAACACGAGTTGTTCTGTTGAGCACAAATTGGGGCTGACTCGCACCTGAGCCCAGTTGAGACAAAGGTGGCAAGAACTGGTCAGGAAGAAAAATCTTCCTTGCAGGGAAGAGCACTGCAGACATGTGCAAAGGTGAGGTTTGGGGCCCAGCAAGTAACTTGGATGGCTGTGGGTGGAGAGGGAGGCAGAGGCCAGATTATGAGGGGCCTTTTTGAGAGGATTGTATTCCATTCTGAAGATAGTGGGTAGTAATTAAAATTTCATTCATTAATTCTATAACATTTATTGACTGCTGTGGGCCAGACCTCTGCTGGCTGCTTGGACCATCACACATAAGAGCAAGACACAGTCCCTCCCCTCACAGAGCTCCCAGGAAGAAGGGGACAGACACGTGGACAGGTAGTGGCACCCGGAGCACAGAGAGGATGCTGTGAGTGGCTGGTTCACATTGTGGAAGGGTCTCTCTAGCAGTTGTGACATGACTTGCTCCTGTGGCATGGTGCAATTTAGAAGTTAGTGTCTACAAAGCCTACAGAAGATGCTATTTGTTTTTCATTCCTGAAACAACAGCAGACTGCTCATTCCTCACATTGCCATGGGAAGTTGTAATGGTCTCTGCTGCCCCCAAGCTGAGGAGCCTTAGACTCCAATACAAGGGAGGAAGGGGAAGAGCAAGATTTTTATTCCCACTGAGTAAGCTATTCCTTTTTAAAACTATCACCTTTTGATAAAATTTAAATCTTATATGTTTTAAAAGGATCAAATCATGTCTTCTCTTTGAACTTGTTAGCAGGGTCCTCAGGACTTTGGGGCTGGTTAGAGTGCGAGAAGCAGTGTGTTGGGTGGGCCCCTTGTTTGTGATAAGAGAAGCCAAGATGTGTGTGTTTCCAGGATCCATCCCTTTATTGATTCTGGCAGCTTGTGTGAGTAGGGATCTGGCTTTCAAAACCCACCTTAAGGCCAGGGAAGGGAAACAATCAGACTCCCTCGTTCTTGCCTTTTTAACATGGGGTATATATAGTATGGTGCCCTGGAATCAGCGCCAGCCTGGAATTTTGGAGATTTCAACTCAATTTCCAGTCTTCCAATTGACAACGGCATGGCTTAATTCGATTCCTGGCTTTGGTGTTTCTTTTTCTCCCTCCTCCTGCTCTCCTCCTTCCTGCTGTCCCTAGTGTAAAAGAGAAAATAAAGTGTATGCACTCTACCTTCCATTGCTCCTCTGAAGGATGAGATGCCTTTCTGGGAATACTTGGAAGTGGTCTATTCATGCACTGAAAAGCATTTTTTGGCCTGGAATCCAATAATCCATAAAGGAGATCTTTCCTACTCACAGAGATATCATAGCCTGGTAAGAACAACAGACTGAAAAGAAACATTACAGATGAGACAGGTGCTGTGTTTGGGCTGTGTTCAGAGGGTCGCTGGGACACAGGAGGCCCTCCAAGGCTTTCCTGTTTGGTGGTGGTAGATCCAGCTCATTGTGGTTCTCCCGTGCAGATGAGCAAGTCTTGGTCAGGATCAAAGCAGTGCTGCACACAAAGCTGGTGATAGCTGTTACCTTCCCCAGGCATATGCCTCCTCTTTCCTGAGTACCTCACATTTCAAATTTGACATAATGTTCAGAATCCTACAGTTCACCTAAAGGAAATCAGGAGCAGTCCTAAGAAAGAAATGGTGTTCCCCTGTCCTTACTGAGGTCCCAAACTGGTAGACCACTATAAATGAAAGGATGCTAGATGGGGCTTCAGGGGGCATGGAGGTGGGAAATGTGAATTCAGGAGTCTAACCTGATTTTGTGTTGTATACACTCATCCTTACCAACCTTCACTGTTTTGCTGATAGTTACACTTTTTCTGGGACTCATCTGTGGTTCTCTGCAG
Seq C2 exon
ATAATGGCACCTGGACACAGCTGTGGCTTGTTTCTGACTATCATGAGCACGGGTCCCTGTTTGATTATCTGAACCGGTACACAGTGACAATTGAGGGGATGATTAAGCTGGCCTTGTCTGCTGCTAGTGGGCTGGCACACCTGCACATGGAGATCGTGGGCACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135503-ACVR1B:NM_004302:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
A:
NA
C2:
PF0006920=Pkinase=FE(19.4=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)