GgaINT0001737 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:48798723-48799314:-
Coord C1 exon
chrUn_random:48798822-48799314
Coord A exon
chrUn_random:48798746-48798821
Coord C2 exon
chrUn_random:48798723-48798745
Length
76 bp
Sequences
Splice sites
5' ss Seq
CCGGTAATG
5' ss Score
6.21
3' ss Seq
AACCCCGCTCTCTCCTGTAGCTC
3' ss Score
9.25
Exon sequences
Seq C1 exon
GTAGCACCCCTATCTTTGCTGGGTTAATGAGGTACCGATACCCTGCCTGTCCTGGGATTTACACCGGAGTCATTAGGGTACCAGCTCTGTCTGTACTGGGATCAATACTGGGTCACTGGAGTACCAGCCTTGTCCATACTGGGGTCACTGGAATAATAGCCCTGTTCCCAAGCGCCACCACCCCACCAACTCCCACCTGCGCCATCAAACTGTCCCTCGGGGTCCCCATCTCCCACTGCCCCATACCACCCCCTATGCCCACCCTGGGGATGCTGCATGGGGAACCAAGGCCCGTGGCACTGCCCAACACGACGGGTGCCAGCCCCACGGGTGGGTGCCACCGCTGCGTCCCCGCAGAGCGCATCAGAGCTGTGGCAGTGGCTGTGGGCCCTGCGCCAGGCCAGCAGTGCCAACGGGGCCATGCTGCCCACCTGCCACCCCGGCGCCTTCCGCACCGCCCGCTGGACCTGCTGCCTGCACCCCAACCGTGCCG
Seq A exon
GTAATGGGGACAGAGGGGACACGAGGGGGTCCCCCCAGTGGGTGTCCCCCCCACCCAACCCCGCTCTCTCCTGTAG
Seq C2 exon
CTCCCGGCTGCAGCCGGACCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014374:ENSGALT00000023224:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.346 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]