BtaINT0122602 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63399195-63400170:-
Coord C1 exon
chr17:63400035-63400170
Coord A exon
chr17:63399316-63400034
Coord C2 exon
chr17:63399195-63399315
Length
719 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGCCGCTGTGTCGCCCCCAGCTT
3' ss Score
8.97
Exon sequences
Seq C1 exon
AACGTGAACGAGCTCAACCAATGGCTGTCGGCCCTGCGCAAGGCCAGCGCCCCCAACCCGGACAAGCTGGCCTCCTGCCACCCCGGTGCCTTCCGCAGCGGGCACTGGACCTGCTGCCTCCAGGCCGAGCGCTCAG
Seq A exon
GTGAGGGGGCAGGGCGGGCTCAGGCTCCGCCCTCCACACCTGTCAATCGCAGGGTGTCCCACCTCCGCCTGGGCTGCCCTGCAACCTTGAGCAAGTAACTTAACCTCTCTCTGCCTTAGTCTCCTCAAGTGTAAAATGGGCCGGATGATAATGTCCACCTTGTAGGGCTGCTGTGAGGATTAAATAAGTTGATATATGCAAAGCGATTAGAACGCTGCCTGTCACACAGATACTTTTTTTCAAGTGCCTACCAAATGCCAGGCTTGTTCTCAGGAAAATAAATGAATAACCAGACAATTGTAATACAGTGTTACAAATGCCAAGATGAGGCTTTTGAGATGCCAGTGAACCCTTCTGGCCCAGCCCCAGGGTAGGACAGCAAGAAGGGCTTCCTGGAGGAGGTGTGGCTCAAGTGTGACCTGTGAGAAGAGTAAGAGTTAAGTAGTGAAGTTGGAGAACGGGACAGAGGAAGAATGTTTCAGGCAGAGCAAAGACAGGCTGAAGGATCGAGAAAGGTCTGTGTGGCTGAGCCTAGAGTGTGGGAGGGGCATGGAGAGAAGGGAGGCTATTGCTCTGTTGGGTGAAGGCAGGGGCAGTGTAGCTGGAAGGAAGCAGTAGGTTTGAAGAGTGGTTTTAGAAGTCTGAGGGGCGGGGCTTGCCCATGGAGGCTCTGGAAGGGGAATGCGAAGCTACAGATGATGCCGCTGTGTCGCCCCCAG
Seq C2 exon
CTTCCGGTTGCAGCCGCACGCACTCGGCCGTCACCCTGGGGGACTGGAGTGACCCGCTGGATCCCGATGCTGAGACCCAGATGGTGTATCGGCAGCTGCTTCTGGGGCGGGACCGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739:ENSBTAT00000022254:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.134
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(15.0=34.8),PF0077914=BTK=PU(68.8=47.8)
A:
NA
C2:
PF0077914=BTK=PD(28.1=22.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTGAACGAGCTCAACCAA
R:
GTCCCGCCCCAGAAGCAG
Band lengths:
249-968
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development