RnoINT0124487 @ rn6
Intron Retention
Gene
ENSRNOG00000001374 | Rasal1
Description
RAS protein activator like 1 [Source:RGD Symbol;Acc:1311820]
Coordinates
chr12:41419135-41420529:-
Coord C1 exon
chr12:41420394-41420529
Coord A exon
chr12:41419256-41420393
Coord C2 exon
chr12:41419135-41419255
Length
1138 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GACAATGTGTGTACCCTCAGCTG
3' ss Score
6.5
Exon sequences
Seq C1 exon
AACGTGAATGACCTCAATCAATGGCTGTCAGCCCTGCGCAAAGCCAGCGCCCCCAACCCGGGCAAGCTGGCTGCTTGTCACCCTGGTGCCTTCCGCAGCGGGCGCTGGACCTGCTGCCTCCAGGCCGAGCGCTCAG
Seq A exon
GTGAGATGGTGTCTGTGCCACAGGCTCTACAGTCCCCAGTCAGCAGCACTGAGCTTCCACCTCGGCGTGCTGTGCAACCTCGAGCACGTGACTTAATTTCTCTGTGCCTCAGTATTCTCATCTGGGAAGTGGGTTTGAAGATAGCCGCTACCTCCTTGGTCCTGTTAGCTGATACCAAGTGGATATATTCCAAGTGCCATCTGCTGTGCAGTATTGGTACATGCAAGTTCTGTTTCCAACATTCCTACTATGTGCCAGCTGCCCAGAGTAGAGACAGTCAGACTTATTGAAGTTAGATGGTGATGTGGTGACAGTGACAGTTTGCTCTGCTATTATTGCTGGAGATGAATCCCTGGCCCTGAGCCCTCCACCATTGACCTGCACCCTGGCTCTAGCCAGACAATTACAACAGTATTAGAATGACCAACCTGAGGCTTTGTCTGAGGCCGAGTCCCAGGGCAGGGATCGGGAAGGCTGCCTGGAGGAGGTGTTGCTTTGGGTGGCTATCGTGGAGTTGAGAGGGTGAGTGAGGATGTGTAGAGCAGAGATCAGGCTGAACAGAGGGGGCTAGGGCAGGGCTAATGGATCATTATGGTCTGTTTTAGCTCTCCTCCTTCTGGGATAAAACACTCTGCACCTTAGGGGAAGAAAGGCTTAGTCTGGCTTGAACTTCCAGATCACAGTCCGTCACTGAGGGAAATCAGGGCAGGAACTTGAGGCAGAAACCATGGAGTAACGCCGTTTGCTGGCTCACCCACTGGTTCACACTCAGCCAGCTTTCTGATGCAGCCCAGGACCACCTGCCTAAGGAATGGTGCTGCCCACAGTAGGCTGGACCCACTCACAATCAACACAGATGTGACCACGGGATAATCTGATCTGGGCATTCTGTGGCTGTGGAATTTTGAGACCTTCCTCTCAGTTGGCTCTACGCTGTGTCAAGTTGCTAAATCTCAACAGGGTCAGGGTTCATGATAGAGGCAAGGAGGCTGGGGAGGAGGCTGAAACCCATGCAAGAGCTACAGGATTGGGGGGTGGGGCTTGGCTAAGAGGAGGTGTGCACAGGTGTTGGGCAAGCTGAAGGCAGGGTGTGATTGTGCCTGGAACAAGGCTTTCCTGACAATGTGTGTACCCTCAG
Seq C2 exon
CTGTTGGCTGTAGCCGCACACACTCAGCTGTCACGCTGGGAGACTGGAGTGACCCACTGGATCCTGACGCCGAAGCCCAGATGGTGTATCGCCAGCTGCTCCTGGGCCGAGACCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001374:ENSRNOT00000001856:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.146
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(15.0=34.8),PF0077914=BTK=PU(68.8=47.8)
A:
NA
C2:
PF0077914=BTK=PD(28.1=22.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAATGACCTCAATCAATGGC
R:
CTGAGCTGGTCTCGGCCC
Band lengths:
255-1393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]