HsaINT0137688 @ hg19
Intron Retention
Gene
ENSG00000111344 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:9873]
Coordinates
chr12:113539694-113541886:-
Coord C1 exon
chr12:113541751-113541886
Coord A exon
chr12:113539815-113541750
Coord C2 exon
chr12:113539694-113539814
Length
1936 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATGAAGCTGTGTTCCCTCAGCCG
3' ss Score
4.47
Exon sequences
Seq C1 exon
AATGTGAATGAGCTCAACCAGTGGCTCTCGGCCTTGCGCAAGGCCAGCGCCCCCAACCCGAACAAGCTGGCCGCCTGCCACCCCGGTGCCTTCCGCAGCGCGCGCTGGACCTGCTGCCTCCAGGCTGAGCGCTCAG
Seq A exon
GTGAGGGGGCAGGGCGGACTGCAGGCTCCGCCCTCCCCACCCGTCAATCAGCGGGTGTCCCACTTCCGCCTGGGCTGGCTGTGCAACCTTGGGCAAGTTACTCAACCTCTCTATGCCTCAGTCTCCTCAACTGTGAAATGAGGTTGATAACAGTGCCTATCTCGTGGAGTTGTGATAATTAAATGACTTGATTTACACAAAGAGCATAGGACGCTGCTTGGCGTATGCGACGTGTTATTTCTAAAGTACTCACTAGGTGCCAGCATCCAGTGGTACTCAAACATCATGAGCTTGTTCTCAAGAAAGATGAGTGCATAACCCAATAATTTTTTTTTTTTTTGAGACAGAGTCTCACTCTATTGCCCAGGCTGGAGTGCAGTGGCACAACCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGACTAGCTGGGTTTATAGGTGCGTACCACTGCACCCAGCTAATTTTTGTATTTTTAGTAGGGACGGGGTTTCCCCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATAAGCCCTCCTCGGCCTCCCAAAGTGTTGGGATTACAGGCCTGAGCCACCGTGCCCGGCCTTTTGTTAATACAATGTTATACATTGTTATTAACAATGTATATACAATGTATAACAATGTATTACAATGTATAACATTGTAAATAATAACATTGTTATTATATAAAATAATATATAATATATATAAAATATATATAAAATAATATATAAAATAATGACATTGTTATTAACAATGTATATACAATATATAATGATGTATTACAATGTATAACAATGTAATACAATGTTATAAGTGCCAAGATGAGACGTTTGAGATTCCAGTGGATGCCTCTGACCCAGCCTCAGGATGGGGACTCAAGGAGGGCTTCCTGGAGGAGGTGCTGCTTAAATGTGACCTGAGTAGAGCAGAAGTTAAGCAGCGGCATTGGAGACAGAACTGGGAGATGGGGGTAAGGAAGTGTTGCAGGTGTCATGAGCAAAGGCCTAGAGGTTGGGACAAGGTAGGCTGACGGATGGAAAAGGGTCTGTGTGACTGGAGCCTAGAATGAGGGAGGAGTACCGGGAGAGGCGAGGCTACTGCTAGAGTCTGGGGAGCAGAAGTGGGGCTGGATGAGAGTGGAGGATGTAAGATTCAACGGAAGTAGTGGGTTTTTTTATTTTTGTTTTTGAGACAGAGTCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCAATCATGGCTCCCTGCAGCCTCAAACTCCTGGGCTCAAGCAGTCCTCTCACCTCAGCCTCCCAAGTAGCTGGGACCACAGACGTGCCACCATGTGAGGCTAATATTTTTGTGTGTGTGTGAGATGGAGTCTCACCCTTTTGCCCAGGCTAGAATGCACTGGTGCAATCTTAGCTCACTGCAATCTGTGCCTCCCAGGTTCAAGAGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAGGCATGAGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGATTTCACCACATTGGCCAGGCTGGTCTGAAACTCCTGACCTCAGGTGATCCACCCACCTTGGCCTCCCAAAGTTCTGGGATTACAGGCGTGAGCCACCGCTCCAGACCCAAGGGTAATTTTTAAATTATTTGTAGAGACAAGGTCTCACTATGTTGCCCAGGCTGGTCTTGAACTCTTGGGCTCGAGTGATCCTCCCATCTCAGCCTCCAAAAGTGCTGAGATTACAGGCATGAGCCACCGTGTGTGGCCTAGAAGTAGTAGGTTTGAGGAGGGATTTTACAGGAAGAAGGAGCACGGCTTGGCGAATGCCTGGCTGTGGAGGCTTCTGGAAGGGGAGAGGGAGTTACTGATGAATGAAGCTGTGTTCCCTCAG
Seq C2 exon
CCGCCGGCTGCAGCCGTACACACTCAGCTGTCACCCTGGGGGACTGGAGTGACCCACTGGATCCTGATGCTGAGGCCCAGACAGTGTATCGGCAGCTGCTCCTGGGGCGGGACCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111344-RASAL1:NM_004658:19
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.134
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(15.0=34.8),PF0077914=BTK=PU(68.8=47.8)
A:
NA
C2:
PF0077914=BTK=PD(28.1=22.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAATGAGCTCAACCAGTGG
R:
CAGGAGCAGCTGCCGATACA
Band lengths:
238-2174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)