GgaINT1023379 @ galGal4
Intron Retention
Gene
ENSGALG00000008150 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr15:11192621-11192952:-
Coord C1 exon
chr15:11192817-11192952
Coord A exon
chr15:11192742-11192816
Coord C2 exon
chr15:11192621-11192741
Length
75 bp
Sequences
Splice sites
5' ss Seq
CCGGTAATG
5' ss Score
6.21
3' ss Seq
AACCCCGCTCTCCCCTGTAGCTC
3' ss Score
8.88
Exon sequences
Seq C1 exon
AGCGCATCAGAGCTGTGGCAGTGGCTGTGGGCCCTGCGCCAGGCCAGCAGTGCCAACGGGGCCATGCTGCCCACCTGCCACCCCGGCGCCTTCCGCACCGCCCGCTGGACCTGCTGCCTGCAGCCCAACCGTGCCG
Seq A exon
GTAATGGGGACAGAGGGGACACGAGGGGGTCCCCCAGTGGGTGTCCCCCCCACCCAACCCCGCTCTCCCCTGTAG
Seq C2 exon
CTCCCGGCTGCAGCCGGACCCACAGCGCGGTGGCGCTGGATGAGTGGAGTGACCCCCTGGACCCCGCAGCGGCGGCACAGAGCCTCTATGGGCACCTCCAGCGTGCAGGGACACGGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150:ENSGALT00000013239:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.122
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(15.0=34.8),PF0077914=BTK=PU(68.8=47.8)
A:
NA
C2:
PF0077914=BTK=PD(28.1=22.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSGALT00000013239fB11311
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGAGCTGTGGCAGTGG
R:
CACTCCACTCATCCAGCGC
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]