GgaINT0002850 @ galGal3
Intron Retention
Gene
ENSGALG00000013370 | Q8AXA8_CHICK
Description
NA
Coordinates
chrUn_random:37256739-37258014:+
Coord C1 exon
chrUn_random:37256739-37256858
Coord A exon
chrUn_random:37256859-37257874
Coord C2 exon
chrUn_random:37257875-37258014
Length
1016 bp
Sequences
Splice sites
5' ss Seq
ACGGTTGGT
5' ss Score
6.35
3' ss Seq
ACTGCGTCGTGCCCTTGCAGACC
3' ss Score
10.39
Exon sequences
Seq C1 exon
ATGAAGAACTCTATGCTGGGGTCTACATCGACTTCATGGGCACTGATGCAGCCATCTTCCGCACTATGGGCAAGCAGACAGCCATGAGGACAGACCAGTACAATTCACGCTGGCTCAACG
Seq A exon
GTTGGTATGGGGTGTCATCTGCCCAGGTGCCCTGGGGATCCCATGGCTCTGACCATAGGGATGGGGTAGATGGCATTCTGCTTCGTCCTGCCCACAGAGGCGGCAGCCAGGGGCAGGTGCATGGATGGTGGAGTGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGAGAGTGGGAGAGTGGGAGAGTGGTTGGATGAATGGATGGATGGATGGGTGGATGGACAGATGACAAATGAATGGATTGACGGATGATATATAGATGGATGGGCAAATGAATGAGTGACAGGTGGGTGGAGAGATAAAGGATGAATGGGTGGGTGAGTGAGTGGACGGATGGATGGATGATGGATAGTTAGGTGGAGGGAGAGAGGAAGGAAGGGATGAAAGGATGGATGGATGGATGGATGGATGGATGGATGGATGAATGGATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCTGTGTAAGGGGTTTTCAGAGAGCTGAGTGTTCAACCATGTCCCCGTAGTCAGTGACCCTGAGCGCTCTTCCTGCCCCCATAGAGCACCCCCGGCCCCAGAGCTGCAGCTGAATAAACAGAGCAGAGCAGATGGGGTGGTCCTGCTGGGCGAGAGGGCTGCCGGGGCAGGGATCGAGGAGGGGGAGCTGTCAGCACTGGCTGGGCACAGGCTGATGGATGGCGAGGGGAAGCCGTCGCACCGGTGGCTTTGCAGCAGCGGGGGCTGTGGGTGTTCCCAGGCTGACAGCACTGCGTCGTGCCCTTGCAG
Seq C2 exon
ACCCTGCCTTCGTCCGTGCCCAGCTCATCCCTGACAGCAGCGAGAGGAATGATGACAAACTCTACTTCTTCTTCCGGGAGAAGTCGGCGGATGCCCCGCTCAGCCCCGGGGTCTATTCCCGCATCGGGCGCATCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013370:ENSGALT00000035766:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(9.0=100)
A:
NA
C2:
PF0140314=Sema=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAACTCTATGCTGGGGTCT
R:
AGGCAGATGCGCCCGATG
Band lengths:
258-1274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]