GgaINT0002856 @ galGal3
Intron Retention
Gene
ENSGALG00000013370 | Q8AXA8_CHICK
Description
NA
Coordinates
chrUn_random:37259750-37260156:+
Coord C1 exon
chrUn_random:37259750-37259838
Coord A exon
chrUn_random:37259839-37260114
Coord C2 exon
chrUn_random:37260115-37260156
Length
276 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TCACTCCTGCTCCCATCTAGGTG
3' ss Score
10.21
Exon sequences
Seq C1 exon
ATCGGGGCACGGTGCAGAAAGTCATTGTGCTGCCCCGGGACGACATGGAGACAGAGGAGCTGATGCTGGAGGAGATCGAGGTGTTCAAG
Seq A exon
GTAAGGGCTGGGTAATCCTACAGCTGCTGTTGAGCATCCTTGGCTCACCCCATGCCCAGAACTGATGGGACACCACCGCCACCAAGTGTCATTGTCCCAGCCCTGGAGCTGCTGGGACACCAACCAGTCCCATGGGCAGTTCCAGGGAGACCCACAACATTGTCCCTCTTCCTGCTGACTTTTGTAGCTGCCTTTGCAGTCCCCCAGCTACTGGTATGGGCATGGGGGATGCACTCTGTGCTTCACTCCGTGCCCTTCACTCCTGCTCCCATCTAG
Seq C2 exon
GTGCCAGCACCCATCAAGATGATGACCATCTCCTCCAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013370:ENSGALT00000035766:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(6.6=100)
A:
NA
C2:
PF0140314=Sema=FE(2.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]