GgaINT0003343 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:63862637-63863333:-
Coord C1 exon
chrUn_random:63863262-63863333
Coord A exon
chrUn_random:63862780-63863261
Coord C2 exon
chrUn_random:63862637-63862779
Length
482 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TCCCCTTCTCTTTTCTCCAGGTC
3' ss Score
13.36
Exon sequences
Seq C1 exon
GCCAACAGAGCCAGCAGCAGAACAGCCATCCCGATTACAGCAAAGCATGGGAGGAATATTACAAAAAACAGA
Seq A exon
GTGAGTGAAACAGGGTTGTTGGAGATTAAGGAAACTCTTGTGGCAGAGTTCACTCTAATCCGATGACTTGCGTCTCCATCCCCTGCCATCATTAGCTTCCAGTCCTCCGCAATTCCCTCTGGTCCCTCCAGTTGGTGATGGTGCATGGTAGTTCTTCCACTGGAAGCTGTCGTGGTGCCTGCTGCTGGGCCTCAGGAGGGCTGCTCCTGCTGAGCTTCAGTGCACAGCAGAGCCCGTGTCCGTGCTGGGGAAGCATTGCACACAGCGAGAATCGATGCTGACAAAACAAAACCCAGAAAGTTGAAGCTGGGTGGTCAAAAAGGTAGGAATGCTCTGCACACAGGTGTGTGGACAGTCGTGGCCCTGCCTTCCTCCGCTCCGTTAAGAGGCGTGTGGTGCCAGCTTCTGGATTTGCATTTGGCAGCCTGGGCTTTGTCTTACCAAACTGCTGATCTCTGCCTTTCCCCTTCTCTTTTCTCCAG
Seq C2 exon
GTCATGCTGCCAGCGCTGCTTCTCAGGCGAGCTCCCAGCCGGACTACACGATGGCCTGGGCAGAGTATTACAGACAGCAGGCTGCCTACTACGGGCAGACACTAGGGCAGGCGCAGGCCCACAGCCAGGTGTGTATTCACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021954:ENSGALT00000035493:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.720 A=NA C2=0.104
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(67.6=92.0)
A:
NA
C2:
PF090055=DUF1897=PD(29.4=20.8),PF090055=DUF1897=WD(100=70.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACAGAGCCAGCAGC
R:
GAATACACACCTGGCTGTGGG
Band lengths:
210-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]