GgaINT0003878 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:21793797-21794611:+
Coord C1 exon
chrUn_random:21793797-21794111
Coord A exon
chrUn_random:21794112-21794296
Coord C2 exon
chrUn_random:21794297-21794611
Length
185 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GGGGTCTTTCCTCCTTCCAGAAT
3' ss Score
9.1
Exon sequences
Seq C1 exon
GGAGCCGCCAGGTCCGCCTGGTGGATGGGCCTGGGCGATGTGCAGGAAGAGTGGAGATCTACTACCAAGGGCAGTGGGGCACGGTCTGCGACGATGCCTGGGACACGGCCGACGCCAACGTGGTTTGCCGCCAGCTGAGCTGCGGATGGGCCGTGGAGGCGGCCGGCTCGGCTCGCTTTGGGGAGGGCTCTGGGCACATCTGGCTGGATGGCGTGAACTGCTCTGGGGATGAAACTGCCCTCTGGAACTGCTCTGCTGAGGCCTGGGGACAGCACGACTGCGGGCACAAGGAGGATGCGGGAGTCGTCTGCTCAG
Seq A exon
GTGTGTGCTGGGAGCCCGGGACAGGGAGGCCGGGGGGCTGAGGCCACCAAAGGCCGCTTCCTGAGCCTGTCCTGGGGACGCCCCATCCACCAGTCCAGCTGGGGGCAATGAGCAGGGAGCACAGGGGGCTTTCTCTCGCCAGCCCCAAACCAGCAAGTTCCCCCTGGGGTCTTTCCTCCTTCCAG
Seq C2 exon
AATTCATGGCCCTGAGGCTGGAGAACAGCGATGGCTGCTCCGGGCGCCTGCAAGTTTTCTACAATGGGACGTGGGGGAGTGTTTGCTCCAACTCGATGACTCCTCACACGGCGAAACTGGTGTGCAAGGAGCTGGGCTGTGGGGATGGAGGGACCCAGGAAATCAGCATCTTCTATGGCAGGGTGAATGGCACCGCGTGGCTGGATCACGTGCAGTGTGGGGAGAGCAACAGCTCCTTCTGGCAGTGTCCCTCTGATCCCTGGGAACTGCAGTCGTATGATGATGTGCGAGACGAGGCCAACATCACCTGCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022426:ENSGALT00000036004:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
PF0053013=SRCR=WD(100=93.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTGCCCTCTGGAACTGC
R:
CTGATTTCCTGGGTCCCTCCA
Band lengths:
251-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]