GgaINT0005115 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:45783468-45784262:-
Coord C1 exon
chrUn_random:45783887-45784262
Coord A exon
chrUn_random:45783761-45783886
Coord C2 exon
chrUn_random:45783468-45783760
Length
126 bp
Sequences
Splice sites
5' ss Seq
GGGCACAAG
5' ss Score
-23.34
3' ss Seq
GGCCCAACCCATCACAGGAGCCA
3' ss Score
-14.27
Exon sequences
Seq C1 exon
AGAAGGCACTATTTGGGGTAAGATCTGGGAGCAACCTTCACCATGGCAACCATCACCTTGGCAACCGTCACCATGGCAACCATCACCATGGCAACCAGAGGCTGCCATTACCCCCTCCTATCCTCACCCCTTGGTCCCATGGCTGACCCTGCAATGTCCCATGGCTCCCACCAATGGGAGAAGCCAACTGTGGGATCCCACCAATGGGAGGAGCCAATGGGGAAAGTGGGCGGGCCCTAACTATGGGTGGAGCCAATGGGGATAGTGGGCGGGTGCAAACAATGGGAGGAGCCAATGAGGGAAGTGGGCGGGTCCTTGGGCTGGAAACAAAAGGGGAACCAACCAATGGGAGGAGTCAATGGACAGGATGGGTGGG
Seq A exon
CACAAGCTTTGGGAGGAGCCAATAGGTAGACTCCACCAATGGGAGGAGCCAGTGAGGAGAGTGGGCGGGTCCTTACAATGGGAGGAGCCAATGGGAAAAATGGGTGGGCCCAACCCATCACAGGAG
Seq C2 exon
CCAATGGGAAGCCTTCATTTGTGGGCGGAGCCAATGGGAGTAGCCCATGGGGGTTGATCCCATTGCCGGGAGGTTCCGGTGCCCTATGGCTGTCCCTGCGCTGCCCCATTGATGTCCCCCTGTCCCCCCAGGTGCTGCAGCGCCCACTGCCGGTGCCGGATGTCGTCCCTCAGCTGGCGGTACTCCTCGGCCATGGCCACCAAATGGGGTCCGATGGCCACCAACGTCCCCAGAGCCTCCCGCAGTCCCTCCAGCTCCGTCTGGGTGCGGCTGAGAGCCCCCTGCAGGTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022136:ENSGALT00000035679:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.659 A=NA C2=0.351
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGAGTCAATGGACAGGA
R:
CCATCGGACCCCATTTGGTG
Band lengths:
246-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]