MmuINT0005070 @ mm9
Intron Retention
Gene
ENSMUSG00000036770 | 4933433C11Rik
Description
RIKEN cDNA 4933433C11 gene [Source:MGI Symbol;Acc:MGI:1921722]
Coordinates
chr2:25069756-25070150:-
Coord C1 exon
chr2:25070015-25070150
Coord A exon
chr2:25069917-25070014
Coord C2 exon
chr2:25069756-25069916
Length
98 bp
Sequences
Splice sites
5' ss Seq
CCAGTAATT
5' ss Score
0.54
3' ss Seq
GGCTGTTGGCTTCCTTGCAGGCC
3' ss Score
8.1
Exon sequences
Seq C1 exon
CTCTCTGGCCAAGGAGCCCAAGCCCCAGAATGAACTTTGATCAGAAGGCTGTGAAATTCCTGGCAAATTTTTACATCAATGGAGGCAAACACTGGACTCGGGGCCCCCTGAGTCAGAAACCTCTTCATCCCACCCA
Seq A exon
GTAATTTCAGAGGGCAGTCGATGGGGGTGGGGTGGGAACGACAACCCAGTGGGAAGACCTTTGGGATGGATGAACAGTGGCTGTTGGCTTCCTTGCAG
Seq C2 exon
GCCCAGTGCTGCTGCTGTGTTATGGTGGGACCAGGAGCTGGAGACTGCCTGGGATGAGATGTGGCACCCAAAGATGAAGAGATCCTCAAGTGGCTTCAGGTTAAGAATAGGCGCCCCCAATGAGTCCACACCTATCAGCACAGGGACTCTGAGAGAGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036770-4933433C11Rik:NM_028961:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.367
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTGAGTCAGAAACCTCT
R:
TAGGTGTGGACTCATTGGGGG
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: