MmuINT0005070 @ mm10
Intron Retention
Gene
ENSMUSG00000036770 | Stpg3
Description
sperm tail PG rich repeat containing 3 [Source:MGI Symbol;Acc:MGI:1921722]
Coordinates
chr2:25214236-25214637:-
Coord C1 exon
chr2:25214495-25214637
Coord A exon
chr2:25214397-25214494
Coord C2 exon
chr2:25214236-25214396
Length
98 bp
Sequences
Splice sites
5' ss Seq
CCAGTAATT
5' ss Score
0.54
3' ss Seq
GGCTGTTGGCTTCCTTGCAGGCC
3' ss Score
8.1
Exon sequences
Seq C1 exon
AGCAGTGCTCTCTGGCCAAGGAGCCCAAGCCCCAGAATGAACTTTGATCAGAAGGCTGTGAAATTCCTGGCAAATTTTTACATCAATGGAGGCAAACACTGGACTCGGGGCCCCCTGAGTCAGAAACCTCTTCATCCCACCCA
Seq A exon
GTAATTTCAGAGGGCAGTCGATGGGGGTGGGGTGGGAACGACAACCCAGTGGGAAGACCTTTGGGATGGATGAACAGTGGCTGTTGGCTTCCTTGCAG
Seq C2 exon
GCCCAGTGCTGCTGCTGTGTTATGGTGGGACCAGGAGCTGGAGACTGCCTGGGATGAGATGTGGCACCCAAAGATGAAGAGATCCTCAAGTGGCTTCAGGTTAAGAATAGGCGCCCCCAATGAGTCCACACCTATCAGCACAGGGACTCTGAGAGAGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036770:ENSMUST00000114363:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.367
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTGAGTCAGAAACCTCT
R:
TAGGTGTGGACTCATTGGGGG
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types