GgaINT0007716 @ galGal3
Intron Retention
Gene
ENSGALG00000002040 | ARVCF
Description
NA
Coordinates
chr15:1105209-1106628:-
Coord C1 exon
chr15:1106511-1106628
Coord A exon
chr15:1105381-1106510
Coord C2 exon
chr15:1105209-1105380
Length
1130 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CACCAAGTTTTTTGTCGCAGTCC
3' ss Score
4.72
Exon sequences
Seq C1 exon
GAATGTAAGTTCAGATGGAGCAGAAGCACGCAGAAGGCTAAGAGAGTGTGATGGCTTGGTGGATGCCCTACTTCACGCCCTACAGTCTGCAGTTGGCAAGAAAGATACGGACAATAAG
Seq A exon
GTGAGCTTGAGTATTAAAACATGACTGGTGTTTCTGTTACTTTAGTCTGAAGGTGTCACACTTGGTCTGACTTCTGTTTTGCTAGTTTTAGAATGGGATTGTGCTTGCTTCTTAAAACACAGTAATTGCCTTCCTCTCATCTCTGTCACGATACCCATGATAGTACTGACAGAGGATCAGCATGCTGCTGCATTACTTTATATGGCTGTTGAGATGAGCAAAGGCAAGTGGCTGTGATGGGTGAGGACTCCTTTCTTATCCTGGTGGTATTATTGCTGTTGTTCTGCATTACTTAAACAACTTTCCTAAGTGCAGTCTCCAAATCAGAACTGAGTCCTGTTGTACTGTGCTTTGCACAGCATCAGCAAAGGGATTAGTTCTCATTTTAAAGAGTTTTTTCAATGCCATCTTAAAATGGTGTAGCGCCAAGGTGTTAGACCTGCAATGCTTTTTGTGGCTTTTTTCTTCTGTGGGTACAAATGTTGATTCATCTGCTTTTATCATCATTTCATCTTGTACTGTTTAAAAGAATGTTTAAAGGCCTGTCACTTAATCAGGTATTTTGGAAGTGGATTTTGTAACCACCTGCTGGCTTCCATTGCAACCTACGGAGCGTTGCTCATGTCAAAATCTGATGTGTTATATATTATCAGCTATTACTACAGAGCAATGTGTGTTCTCATTCAACTCCTCACATAGTCTTCATTCTGACTCAGAGGAAATGTAATAAATAGAGTCTCTTGGGGATTGTAGAGGTTGGAAGAGTGTGAGAGACGCTATATTAAAATAAGAACCTTAAATGATGGTTTTCTGCTGTGTGTTTGATCTCCTGGTGAGTTTGTATTCTTTATGCATGATCAGTTGGTATTTGTGATTGGAGAATTTTCTTGTTGAATGGGTGCTATTTATGAAGTGCTTCACTTTTGAAGAAAAAAATGGTTTAGAGCAGATTAGAACCTTAAATTAGTTTTTGGTTTTTTTTACTAACTTTGCTTAATATGCCATTCTTTTCCTGGTTGGGTGCCCTTTTTTCTTTTTTTCCTAATTTCTCCCAACTTTCCGCTGTGTAATAAAACTTTGCAGATAGAAGGGTGCAATACTCATTTTTAACACCAAGTTTTTTGTCGCAG
Seq C2 exon
TCCGTGGAGAATTGTGTGTGCATCATGAGGAACCTTTCCTATCATGTCCACAAAGAGGTCCCCGGAGCTGATAAGTACCAAGAACTTGATGCTGGTCAGACTGCGGGCACGGGAGGCTCTCAGAAAAAGAAGAAAGATGATGCTGGTTGTTTCGGTGGAAAGAAAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040:ENSGALT00000003170:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.448
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAAGTTCAGATGGAGCAGAAGC
R:
TTTAGCTTTCTTTCCACCGAAACA
Band lengths:
286-1416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]