GgaINT0007724 @ galGal3
Intron Retention
Gene
ENSGALG00000002040 | ARVCF
Description
NA
Coordinates
chr15:1071614-1074026:-
Coord C1 exon
chr15:1073973-1074026
Coord A exon
chr15:1071706-1073972
Coord C2 exon
chr15:1071614-1071705
Length
2267 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GTCATATTATTCCTCCTCAGATG
3' ss Score
8.8
Exon sequences
Seq C1 exon
ATAATGAGAAAACTGGGAGTCGTGATATGATACCTATGGATGAACTTGGCCCAG
Seq A exon
GTAAATTCAGTCATTCTGTCTGTTCAGAATATAACTTCAGAAGATAACTTACTCAGAATCAATCTGAAACATGAGAGAAGCAGTAGTCACTATTCCTGGAGAGGTATGATCCTTGGGGACGGAGGTATTACTTTTCTGATGCAGCCTTCTTCAAGACATTACTCATTTTATTAGGTCCAGTCATGAACTTCCCATCTCTGCTGCTGCATATCTTGACAGAGTTGTAGCACAGTGCTTGGTTTTCAGAAGCACATACTCCATTAGCACTGGTGTGTGCAACACCATTAGCATGCAGGCCACACAACAGTGGGCTGACAGTACAAACTTCGAAATCTTGGAATTTGGATACAAAAAACAAGGTTCTTGCCCATTCTTTGTTAGATTCCTGTTGAGCATGGGGTTTTATTTTTTATTTGTTTGATTGTTTTTTTAGTACTGAAGAACTGCCATACTTTAAGTTTTTCATTATTAATGTCTTTATTCTGACGTTGCTGTCTGGGAAATACTACAGCTGCCATACTTCACCTTAATGGCTTTTGCTTTCTGGGGGTAGGTTTAAGGTTTCCCTTTGTGTCTTAGCAATTGATTTTAAAATGTTTTGGGATTACCCTCGATACTAGTAAAGAAATGAAGAGTGATCTGTTACACCATTGTGAGTATAATTAAAATTTGACTGTGAGAATCTACCTCTCAGTTGAGTGTTTAAATTACTGTGAGTCAGCATGCTTCCATCATTTGTGTAGATACCTATGTGAACAATTTACTCCTAAATGAATGATGAATCTTTAATATATAACTTAACTAGTAGTATTCATGCTAGACATTCTGAAGAGAATTATTGATTAGCATTCCACCACAAATTCTGGCTGGGTGACTGAATGCAACTAGTAGGCTTTGGGTTCTACTTTTTTTTTTCAAAAGGAATAGCCAGTAATGTTAACTTCATTGTTGTCAACAAATGTTTGTAAGTGAAGTTCTGTGTAGCAATGCTTGAAAATCTGTGCACTACGTGTGTAACTCAATTGCTTAGTTATTTTTAAGCAGCATGGGTAAGTAATGTTACTAGCCATGATGTCATGAGTGCTGCCTCAGGTCTGTCTGCACTTTGATTCCTGAGATGTGTAGAAAACTTGAGCTCTTTTAAAATTAACTTCACTGTGACCAGCATAAACGTCGTTTAGAACTGTGCTGTGACTGTTCGGAACAACTCACTCCAGCTGCTTTTGTCGTGTGGGCAAACAGAGCCTCTTTGTGCCAAGGCAACCCCACAAAAAAGCTTTTTTTCTTAGTGACATTTTGCAGGCAAGTACTGTGCCAAGAGATGCACATTTTGGGTAGCTCCCTAAGAACCTTTTTGTAGTCTTCTAAGAACCCAGTTTGTCAGAATGTGAAAACATTAATGATCTGTCAGTTACATGGGTAAAAACAAAAGCCTACAGGAATATATAGATTGAGTGTCATTTACTCCAGGTCACGATGCTGTCAAAGCAGAGCAGGAGACGATCTATTTGTAATTGATAATGAGGGAAATCTGATGCCTCAGGAAAATAAATTCAGGTTTGTGTTGGCTGAACTGATTCAAGGCAGAGTATGTTCTGAAATATGTAAAGCTATTTCTTTATAATGGTCCCTCACACTTTTCCTCCGTGTACTAATCACGCTTTCATATTGTTTCTTAGTTGTCAGGAGAAAAAGCAGCATCAGGTGCTGCTTTGGAATGAAAGGCAGTCCTAGCACAGCAGAGTTTGCATCAAGATTTCTTCCAACTCAACAGTCTCCTTTTCTCAATGCACTGAAAGGGGCTATTTGAAATTACTGTTATGTCCTGTTAATAGTCAGGCTCAGGAAGAGTGGGAACATGCTGCAGAGCATTCAGAGAATGAACACAGCCAATTAATCAGGCTGCTAAGCAAGGAACACAAGATTTGAGCTGAATTTGGAGCTCATTAGCCACAGGGCTTGAGATGACAACTTGCTGCTTTCCTTAGGCACACTACAAAACTGCAGTAGGTTGGGATGAAAACAGTTCTGCTTGCTAATGAGTGCCAGCATCTGGCAGTGATACAAAAAAAAAAAAAAAGCTTTTCTGTTTTAAACCGGTGAAAGTAAAATCTCAGAGCTAGAGCGTATGTGAGAAGCAGGCTACCAGCATCTTTGGGTTTTGATGGTCTCTTTTCCTGTTTCTTTGCTGAAGAATACTGCTAGCATCAGCTCTGTTTTGCTCTTTGTTGTGCTTCATGCCTAACTGTCATATTATTCCTCCTCAG
Seq C2 exon
ATGGATACTCTACCATCGATCACCGGGACAAGGAGCGCAAATACAAGACCAGCGATAACACAGGGGATGCCTCAGAGAAAGAACCCTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040:ENSGALT00000003170:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0278111=G6PD_C=PD(5.9=15.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]