BtaINT0021839 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001473 | ARVCF
Description
Bos taurus armadillo repeat gene deleted in velocardiofacial syndrome (ARVCF), mRNA. [Source:RefSeq mRNA;Acc:NM_001105380]
Coordinates
chr17:74930718-74931186:-
Coord C1 exon
chr17:74931133-74931186
Coord A exon
chr17:74930804-74931132
Coord C2 exon
chr17:74930718-74930803
Length
329 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
CCTCTGCCTCCGCCCAGCAGACG
3' ss Score
6.65
Exon sequences
Seq C1 exon
ACGGTGAGAAGCCAGGTGGCCGGGACATGATCCCCATGGAGGCGCTTGGTCCAG
Seq A exon
GTGCGGGCAGGTGCAGGCTGTTTGCTCTGTGTGGGGAGGGCCTTCCAAGGAGGGGTGGTTAGAAAAGTGATTTGGCTTAGGGGTGCTCAGGGAGCGAGGGGCGGGCCAGCCAGGGAGGGGTCACTGTCCAGCCAATCTGGTCTGCCACTTGATGGCGGCTGGAGGGCTCTGAGCTGTGGGCCGGGGGGCCAGCAGGGGGAGTGGGGACAGATGAGAAGACCCGGCTCCGCGCAGTCCAGGCGGACGCCCTCCCCAGATACACCCTGGGCGCTGAGGGACAGCCACACCTCGGTGCCTGCCTCAGGGTCCCCTCTGCCTCCGCCCAGCAG
Seq C2 exon
ACGGCTACTCCACCATGGACAGGAGGGAGCGTAGGCCTCGAGGCAGTGACCCAGCGGGGGAGACCTCTGAGAAGGAGCCGTTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001473:ENSBTAT00000001929:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development