RnoINT0021504 @ rn6
Intron Retention
Gene
ENSRNOG00000001888 | Arvcf
Description
ARVCF, delta catenin family member [Source:RGD Symbol;Acc:1306655]
Coordinates
chr11:86737797-86738207:-
Coord C1 exon
chr11:86738154-86738207
Coord A exon
chr11:86737883-86738153
Coord C2 exon
chr11:86737797-86737882
Length
271 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGCTCTGCTCTACCCTACAGATG
3' ss Score
10.46
Exon sequences
Seq C1 exon
ATGGGGAGAAGTCAACTACTCGGGATGTGATCCCCATGGATACCCTTGGTCCAG
Seq A exon
GTGAGTGCTGATATGTAGGTGCGACCTCGGGCAAGAGGACCGGGGAGGACCACCTGGTTTCATGGTGTGATCCTGGGCGATGCTGAGAAGGCCTTGCTATGATAAAATGTCAGCTGGAGAAGAGATAGGTGGTCGGTTTGGAGGCTTCAGGACTGGTTGGAGCTGGCACTTAGACCTGAAGTCCCCTGTCCCAGGGCTGAAGGAAGATCACCTATCCTCACGGTGACTTCCCCCGAATTCCACTTACTCCGTGCTCTGCTCTACCCTACAG
Seq C2 exon
ATGGCTACAGCACAGTTGACCGGAGGGAGAGGAGGACACTGGGCAGCGACTCCATAGGCGACTCCTCTGAGAAGGAACTACTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001888:ENSRNOT00000044635:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGGAGAAGTCAACTACTCGG
R:
TTTCAGTAGTTCCTTCTCAGAGGAGT
Band lengths:
140-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]