HsaINT0012968 @ hg38
Intron Retention
Gene
ENSG00000099889 | ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:HGNC Symbol;Acc:HGNC:728]
Coordinates
chr22:19971886-19972411:-
Coord C1 exon
chr22:19972358-19972411
Coord A exon
chr22:19971972-19972357
Coord C2 exon
chr22:19971886-19971971
Length
386 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCACCTTACCCCATCTACAGACG
3' ss Score
7.93
Exon sequences
Seq C1 exon
AGGGCGAGAAAACTGGCAGCCGGGATGTGATCCCCATGGATGCGCTGGGCCCAG
Seq A exon
GTGAGTGCAGATGCAGTGTGGTTGGTTTTCTGTGCCGGGAGGGGACCAAGGCCTGAAGTGGGCCTGCTGGTTTTATGGGGTGTAGATGGTGCTGGGTGGAGGAGAGATATTTGGTTTAGGGGTGCTTAGAGGGTGAGGTACAGGGCAGCTAGAGAGGGATTAGTGCTCAGCCAGGGGCTCTGACCCACAAGTGGAGGGGAGTCTGGAGAGTTGGCAGGGTGTTGGTGAGAGCTGGCACCAGCCTGGATCTCCAGGACAGGGTGGGTGGGGGCTGTCTCCCAAAGCCCCTGTCCCACGAGTCCCCTGTGTCTGGGCTGAGAGGGAGATCTGCTCCTACAGGGCCTCCCTCAGAGCGCCCCTCATGCCCCACCTTACCCCATCTACAG
Seq C2 exon
ACGGATACTCCACGGTGGACCGGAGGGAGCGGAGGCCACGGGGCGCCAGCTCTGCAGGAGAGGCCTCTGAGAAGGAACCCTTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099889:ENST00000263207:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development