GgaINT1006767 @ galGal4
Intron Retention
Gene
ENSGALG00000002040 | ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:RefSeq peptide;Acc:NP_989796]
Coordinates
chr15:1054793-1057205:-
Coord C1 exon
chr15:1057152-1057205
Coord A exon
chr15:1054885-1057151
Coord C2 exon
chr15:1054793-1054884
Length
2267 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GTCATATTATTCCTCCTCAGATG
3' ss Score
8.8
Exon sequences
Seq C1 exon
ATAATGAGAAAACTGGGAGTCGTGATATGATACCTATGGATGAACTTGGCCCAG
Seq A exon
GTAAATTCAGTCATTCTGTCTGTTCAGAATATAACTTCAGAAGATAACTTACTCAGAATCAATCTGAAACATGAGAGAAGCAGTAGTCACTATTCCTGGAGAGGTATGATCCTTGGGGACGGAGGTATTACTTTTCTGATGCAGCCTTCTTCAAGACATTACTCATTTTATTAGGTCCAGTCATGAACTTCCCATCTCTGCTGCTGCATATCTTGACAGAGTTGTAGCACAGTGCTTGGTTTTCAGAAGCACATACTCCATTAGCACTGGTGTGTGCAACACCATTAGCATGCAGGCCACACAACAGTGGGCTGACAGTACAAACTTCGAAATCTTGGAATTTGGATACAAAAAACAAGGTTCTTGCCCATTCTTTGTTAGATTCCTGTTGAGCATGGGGTTTTATTTTTTATTTGTTTGATTGTTTTTTTAGTACTGAAGAACTGCCATACTTTAAGTTTTTCATTATTAATGTCTTTATTCTGACGTTGCTGTCTGGGAAATACTACAGCTGCCATACTTCACCTTAATGGCTTTTGCTTTCTGGGGGTAGGTTTAAGGTTTCCCTTTGTGTCTTAGCAATTGATTTTAAAATGTTTTGGGATTACCCTCGATACTAGTAAAGAAATGAAGAGTGATCTGTTACACCATTGTGAGTATAATTAAAATTTGACTGTGAGAATCTACCTCTCAGTTGAGTGTTTAAATTACTGTGAGTCAGCATGCTTCCATCATTTGTGTAGATACCTATGTGAACAATTTACTCCTAAATGAATGATGAATCTTTAATATATAACTTAACTAGTAGTATTCATGCTAGACATTCTGAAGAGAATTATTGATTAGCATTCCACCACAAATTCTGGCTGGGTGACTGAATGCAACTAGTAGGCTTTGGGTTCTACTTTTTTTTTTCAAAAGGAATAGCCAGTAATGTTAACTTCATTGTTGTCAACAAATGTTTGTAAGTGAAGTTCTGTGTAGCAATGCTTGAAAATCTGTGCACTACGTGTGTAACTCAATTGCTTAGTTATTTTTAAGCAGCATGGGTAAGTAATGTTACTAGCCATGATGTCATGAGTGCTGCCTCAGGTCTGTCTGCACTTTGATTCCTGAGATGTGTAGAAAACTTGAGCTCTTTTAAAATTAACTTCACTGTGACCAGCATAAACGTCGTTTAGAACTGTGCTGTGACTGTTCGGAACAACTCACTCCAGCTGCTTTTGTCGTGTGGGCAAACAGAGCCTCTTTGTGCCAAGGCAACCCCACAAAAAAGCTTTTTTTCTTAGTGACATTTTGCAGGCAAGTACTGTGCCAAGAGATGCACATTTTGGGTAGCTCCCTAAGAACCTTTTTGTAGTCTTCTAAGAACCCAGTTTGTCAGAATGTGAAAACATTAATGATCTGTCAGTTACATGGGTAAAAACAAAAGCCTACAGGAATATATAGATTGAGTGTCATTTACTCCAGGTCACGATGCTGTCAAAGCAGAGCAGGAGACGATCTATTTGTAATTGATAATGAGGGAAATCTGATGCCTCAGGAAAATAAATTCAGGTTTGTGTTGGCTGAACTGATTCAAGGCAGAGTATGTTCTGAAATATGTAAAGCTATTTCTTTATAATGGTCCCTCACACTTTTCCTCCGTGTACTAATCACGCTTTCATATTGTTTCTTAGTTGTCAGGAGAAAAAGCAGCATCAGGTGCTGCTTTGGAATGAAAGGCAGTCCTAGCACAGCAGAGTTTGCATCAAGATTTCTTCCAACTCAACAGTCTCCTTTTCTCAATGCACTGAAAGGGGCTATTTGAAATTACTGTTATGTCCTGTTAATAGTCAGGCTCAGGAAGAGTGGGAACATGCTGCAGAGCATTCAGAGAATGAACACAGCCAATTAATCAGGCTGCTAAGCAAGGAACACAAGATTTGAGCTGAATTTGGAGCTCATTAGCCACAGGGCTTGAGATGACAACTTGCTGCTTTCCTTAGGCACACTACAAAACTGCAGTAGGTTGGGATGAAAACAGTTCTGCTTGCTAATGAGTGCCAGCATCTGGCAGTGATACAAAAAAAAAAAAAAAGCTTTTCTGTTTTAAACCGGTGAAAGTAAAATCTCAGAGCTAGAGCGTATGTGAGAAGCAGGCTACCAGCATCTTTGGGTTTTGATGGTCTCTTTTCCTGTTTCTTTGCTGAAGAATACTGCTAGCATCAGCTCTGTTTTGCTCTTTGTTGTGCTTCATGCCTAACTGTCATATTATTCCTCCTCAG
Seq C2 exon
ATGGATACTCTACCATCGATCACCGGGACAAGGAGCGCAAATACAAGACCAGCGATAACACAGGGGATGCCTCAGAGAAAGAACCCTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040:ENSGALT00000003170:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]