DreINT0033727 @ danRer10
Intron Retention
Gene
ENSDARG00000061688 | arvcfb
Description
armadillo repeat gene deleted in velocardiofacial syndrome b [Source:ZFIN;Acc:ZDB-GENE-060526-60]
Coordinates
chr5:25674360-25675134:-
Coord C1 exon
chr5:25675081-25675134
Coord A exon
chr5:25674452-25675080
Coord C2 exon
chr5:25674360-25674451
Length
629 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTTTCTATCCTTCTCATTAGATG
3' ss Score
8.89
Exon sequences
Seq C1 exon
GCCACCGAGGGTGTAGCGGTGGGGATATGATACCAATGGACGAACTCGGTCCAG
Seq A exon
GTAAGACAACACCGGCATGCCCTCAAAAACAAAAACTAATGTGGTTTTGTGAGAACACAATACCATAATCCGTCTAATTCGCCACTTCTAAAATGTCCCCCATCAGTGTTGCATTTAGTAATTCAGATCTAACCGTGTCTCTGTTTTCCCTAAAGAGTTGCATTCATCCCAACGCTGTCTGCGAAACCCCTCTTTTAATAAGATGTTTGTAGTGTTGTTGTGTTATGGGCCAGTGGAAATTTGACCAGAAGCACTACTGCTTGTTCGCCACCTCTTCATTACAGCATCGTCTCTCTGATCTTCTCCTCTGAAGCAGCGTCCTCTCCAAGCCTGACTGACAATAATTGGACAGAGGCTGAAGACGGGGCGCTGCTTGAGTGGGTAGAAGGAAGTGATGAAAAGTGCCGCCTGTGGGAGAGCGCTAACACACACCGCCTGCATGCACACGAACACACAGTAATCGCACACATCAGGCGAGTGCGAGAACATCTGTGAACGCAGCACGTACGGGACGCTCTCAGCTGAAGGTTGAGGGATCTGTCGCTGCTGTTTGAAGAGTCGTGCTGAGGGTGCCGACACACAGCGATCACGAATAACAGAGCCTCACTGCTTTCTATCCTTCTCATTAG
Seq C2 exon
ATGGCTATTCCACGATTGACCAGCGAGACAAAGACTCCAAGTACAAAAGCAGTGACATCTCGTCGGATCTGCAGGAGCGGGAGCCGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061688:ENSDART00000146070:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]