BtaEX0004466 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001473 | ARVCF
Description
Bos taurus armadillo repeat gene deleted in velocardiofacial syndrome (ARVCF), mRNA. [Source:RefSeq mRNA;Acc:NM_001105380]
Coordinates
chr17:74930718-74931538:-
Coord C1 exon
chr17:74931448-74931538
Coord A exon
chr17:74931133-74931186
Coord C2 exon
chr17:74930718-74930803
Length
54 bp
Sequences
Splice sites
3' ss Seq
CATACGCTCATGCCTTGCAGACG
3' ss Score
7.87
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
TCAGCCGCTGCTAATGCCAGGGGCCCCAAGGCAGCCCCGAGTCCGGGAGGCTTGGACGACAGCACGCTGCCGCTGGTGGAAAAGAGCCTGG
Seq A exon
ACGGTGAGAAGCCAGGTGGCCGGGACATGATCCCCATGGAGGCGCTTGGTCCAG
Seq C2 exon
ACGGCTACTCCACCATGGACAGGAGGGAGCGTAGGCCTCGAGGCAGTGACCCAGCGGGGGAGACCTCTGAGAAGGAGCCGTTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001473_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGGCTTGGACGACAG
R:
TCAACGGCTCCTTCTCAGAGG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development