DreEX0024877 @ danRer10
Exon Skipping
Gene
ENSDARG00000078233 | ctnnd1
Description
catenin (cadherin-associated protein), delta 1 [Source:ZFIN;Acc:ZDB-GENE-110208-9]
Coordinates
chr1:43520909-43522136:+
Coord C1 exon
chr1:43520909-43521099
Coord A exon
chr1:43521231-43521284
Coord C2 exon
chr1:43522054-43522136
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTTTTTTTGATAGGGG
3' ss Score
8.52
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
CAACCGTTCAGATCGTGAGGTGCGTGGTGCAGGCCTGGTGCTGCAGATCGTGTGGGGCTTTAAGGAGCTCCGCCGCACTCTGGAGAAAGACGGCTGGAAGAAAACCGACTTCATGGTGAACCTGAACCCGCCAAACAACACCCGCAGCAACGGGGGCTACGAGGAGAGCACCCTGCCGCTAATAGACAGGG
Seq A exon
GGGGCAAACAAGACCGAGAAAAAGACATGATTCCTCTTAATGACATTGGACCAG
Seq C2 exon
ACGCTTATTCAACAATAGACCAGCGAGGACGGAGAAACACTTTAGATGACACTCTGGACCGCTCAGACAGAGACGCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078233_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.492 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGGAAGAAAACCGACTT
R:
AAAGTGTTTCTCCGTCCTCGC
Band lengths:
144-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]