BtaEX0010338 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002411 | CTNND1
Description
catenin (cadherin-associated protein), delta 1 [Source:HGNC Symbol;Acc:HGNC:2515]
Coordinates
chr15:82322838-82326087:+
Coord C1 exon
chr15:82322838-82322925
Coord A exon
chr15:82325252-82325314
Coord C2 exon
chr15:82325984-82326087
Length
63 bp
Sequences
Splice sites
3' ss Seq
AACTTTCTGACTCCCTATAGATA
3' ss Score
8.63
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
GTGAGCCTGAACAATGCTTCTCGGAGCCAGAGCAGCCACTCCTATGATGACAGCACGCTCCCTCTCATTGACCGGAGCCAGAGATCAG
Seq A exon
ATAAGAAACCTGATCGGGAAGAAATTCAGATGAGCAGTATGGGATCAAATACGAAATCGTTAG
Seq C2 exon
ATAACAACTATTCCACACTCAATGAAAGAGGGGACCACAACAGAACACTGGACCGACCCGGAGACCTAGGCGAAATGGAGCCACTGAAGGGAGCACCCCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002411_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGAACAATGCTTCTCGG
R:
TGTTCTGTTGTGGTCCCCTCT
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development