DreEX0015025 @ danRer10
Exon Skipping
Gene
ENSDARG00000061688 | arvcfb
Description
armadillo repeat gene deleted in velocardiofacial syndrome b [Source:ZFIN;Acc:ZDB-GENE-060526-60]
Coordinates
chr5:25674360-25678322:-
Coord C1 exon
chr5:25678235-25678322
Coord A exon
chr5:25675081-25675134
Coord C2 exon
chr5:25674360-25674451
Length
54 bp
Sequences
Splice sites
3' ss Seq
GCCTGTAAAATGCTTTGCAGGCC
3' ss Score
6.29
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCGATAGCAGCTGGAACTCCCAAAGGATCCAAGAGCTGCAAGCCTGGCTACGACGACACCACACTTCCCTTGATGGAGAAGAGCCAAG
Seq A exon
GCCACCGAGGGTGTAGCGGTGGGGATATGATACCAATGGACGAACTCGGTCCAG
Seq C2 exon
ATGGCTATTCCACGATTGACCAGCGAGACAAAGACTCCAAGTACAAAAGCAGTGACATCTCGTCGGATCTGCAGGAGCGGGAGCCGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061688_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGATCCAAGAGCTGCAAGC
R:
CTGCAGATCCGACGAGATGTC
Band lengths:
140-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]