GgaEX1009274 @ galGal4
Exon Skipping
Gene
ENSGALG00000002040 | ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:RefSeq peptide;Acc:NP_989796]
Coordinates
chr15:1054793-1057822:-
Coord C1 exon
chr15:1057732-1057822
Coord A exon
chr15:1057152-1057205
Coord C2 exon
chr15:1054793-1054884
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCCATGCTTCTGTCTTACAGATA
3' ss Score
10.78
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
TCTGTTTCTGCAACTCCAAAGAGTTCCAAAGGTACTGCTGGCAGGTCTGGCTATGATGACAGCACTTTGCCGCTGGTGGATAAAAGTCAAG
Seq A exon
ATAATGAGAAAACTGGGAGTCGTGATATGATACCTATGGATGAACTTGGCCCAG
Seq C2 exon
ATGGATACTCTACCATCGATCACCGGGACAAGGAGCGCAAATACAAGACCAGCGATAACACAGGGGATGCCTCAGAGAAAGAACCCTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCAAAGGTACTGCTGGCA
R:
CATCCCCTGTGTTATCGCTGG
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]