GgaEX1009274 @ galGal3
Exon Skipping
Gene
ENSGALG00000002040 | ARVCF
Description
NA
Coordinates
chr15:1071614-1074643:-
Coord C1 exon
chr15:1074553-1074643
Coord A exon
chr15:1073973-1074026
Coord C2 exon
chr15:1071614-1071705
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCCATGCTTCTGTCTTACAGATA
3' ss Score
10.78
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
TCTGTTTCTGCAACTCCAAAGAGTTCCAAAGGTACTGCTGGCAGGTCTGGCTATGATGACAGCACTTTGCCGCTGGTGGATAAAAGTCAAG
Seq A exon
ATAATGAGAAAACTGGGAGTCGTGATATGATACCTATGGATGAACTTGGCCCAG
Seq C2 exon
ATGGATACTCTACCATCGATCACCGGGACAAGGAGCGCAAATACAAGACCAGCGATAACACAGGGGATGCCTCAGAGAAAGAACCCTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040-'20-22,'20-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0278111=G6PD_C=FE(58.8=100)
A:
PF0278111=G6PD_C=PD(5.9=15.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCAAAGGTACTGCTGGCA
R:
CATCCCCTGTGTTATCGCTGG
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]