RnoEX0011993 @ rn6
Exon Skipping
Gene
ENSRNOG00000001888 | Arvcf
Description
ARVCF, delta catenin family member [Source:RGD Symbol;Acc:1306655]
Coordinates
chr11:86737797-86738496:-
Coord C1 exon
chr11:86738409-86738496
Coord A exon
chr11:86738154-86738207
Coord C2 exon
chr11:86737797-86737882
Length
54 bp
Sequences
Splice sites
3' ss Seq
TACCTGCTCATGCCTTGCAGATG
3' ss Score
9.72
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TCTGCTAGCACTGCCAAAGGACCCAAAGGGACACCAAATTCTGGAGGCTTTGATGACAGCACACTGCCACTGGTAGACAAGAACCTTG
Seq A exon
ATGGGGAGAAGTCAACTACTCGGGATGTGATCCCCATGGATACCCTTGGTCCAG
Seq C2 exon
ATGGCTACAGCACAGTTGACCGGAGGGAGAGGAGGACACTGGGCAGCGACTCCATAGGCGACTCCTCTGAGAAGGAACTACTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001888-'32-32,'32-31,33-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCCAAAGGACCCAAAGG
R:
GAGTCGCCTATGGAGTCGCT
Band lengths:
144-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]