Special

MmuEX0013081 @ mm10

Exon Skipping

Gene
ENSMUSG00000034101 | Ctnnd1
Description
catenin (cadherin associated protein), delta 1 [Source:MGI Symbol;Acc:MGI:105100]
Coordinates
chr2:84603649-84608416:-
Coord C1 exon
chr2:84608329-84608416
Coord A exon
chr2:84605184-84605246
Coord C2 exon
chr2:84603649-84603752
Length
63 bp
Sequences
Splice sites
3' ss Seq
AACTTTCTAATTCCATATAGATA
3' ss Score
6.35
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
GTGAATCTAAACAATGCATCTAGAAGCCAGAGCAGCCATTCATATGATGATAGCACTCTCCCCCTCATTGACCGGAATCAAAAATCAG
Seq A exon
ATAAGAAACCTGACCGGGAAGAAATTCCAATGAGCAATATGGGGTCAAACACAAAATCATTAG
Seq C2 exon
ATAACAACTATTCCACACTGAATGAGAGAGGAGACCACAACAGAACACTGGACCGATCTGGGGATCTGGGTGATATGGAACCATTGAAGGGAGCACCCTTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034101_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=1.000 A=1.000 C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000107323





     
                   









    
Main Skipping Isoform:
ENSMUSP00000107325





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000064518, ENSMUSP00000097524, ENSMUSP00000107299, ENSMUSP00000107304, ENSMUSP00000107305, ENSMUSP00000107307, ENSMUSP00000107313, ENSMUSP00000107315, ENSMUSP00000107316, ENSMUSP00000107317, ENSMUSP00000107318, ENSMUSP00000107319, ENSMUSP00000107320, ENSMUSP00000107321, ENSMUSP00000107322, ENSMUSP00000107324, ENSMUSP00000107327, ENSMUSP00000141166
          









    
Other Skipping Isoforms:
ENSMUSP00000042543, ENSMUSP00000065252, ENSMUSP00000107306, ENSMUSP00000107314, ENSMUSP00000107326
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr11:57814311-57814373 
HIGH PSI
HsaEX0017873
Human
(hg19)
chr11:57581783-57581845 
HIGH PSI
HsaEX0017873
(CTNND1)
Rat
(rn6)
chr3:72006427-72006489 
ALTERNATIVE
RnoEX0025203
(Ctnnd1)
Cow
(bosTau6)
chr15:82325252-82325314 
ALTERNATIVE
BtaEX0010338
(CTNND1)
Chicken
(galGal4)
chr5:16245878-16245925 
HIGH PSI
GgaEX1018143
(CTNND1)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr1:43521231-43521284 
ALTERNATIVE
DreEX0024877
(ctnnd1)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCTAGAAGCCAGAGCAGCCAT

				
R: 
CCCAGATCGGTCCAGTGTTCT

				
Band lengths: 
132-195

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"