RnoEX0025203 @ rn6
Exon Skipping
Gene
ENSRNOG00000030790 | Ctnnd1
Description
catenin delta 1 [Source:RGD Symbol;Acc:1305643]
Coordinates
chr3:72004744-72009796:-
Coord C1 exon
chr3:72009709-72009796
Coord A exon
chr3:72006427-72006489
Coord C2 exon
chr3:72004744-72004847
Length
63 bp
Sequences
Splice sites
3' ss Seq
AACTTTCTAATTCCATATAGATA
3' ss Score
6.35
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
GTGAATCTAAACAATGCATCTAGAAGCCAGAGCAGCCATTCATATGATGATAGCACTCTCCCCCTCATTGACCGGAACCAAAAATCAG
Seq A exon
ATAAGAAACCTGACCGGGAAGAAATTCCAATGAGCAATATGGGGTCAAACACAAAATCATTAG
Seq C2 exon
ATAACAACTATTCCACACTGAATGAGAGAGGAGACCACAACAGAACACTGGACCGATCTGGGGATTTGGGTGATATGGAGCCATTGAAGGGAGCACCCTTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030790_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCAGAGCAGCCATTCAT
R:
AAATCCCCAGATCGGTCCAGT
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]